A DSL for data-driven computational pipelines
#
singularity-containers
Repositories 36
Container tools for scientific computing!
HTML
Updated Jan 7, 2019
command line tool for working with singularity hub and singularity containers
Python
Updated May 19, 2018
server for storage and management of singularity images
example singularity definition files and demos
Shell
Updated Jun 14, 2018
example analysis with Singularity Hub and Docker containers run on local HPC and cloud providers
Intel HPC Containers using Singularity
Shell
Updated Oct 22, 2018
The Scientific Filesystem Specification and Documentation
CSS
Updated Nov 22, 2018
Repository with all my Singularity recipes
Updated Feb 21, 2019
This is a demo about how to develop and deploy a pipeline using nextflow, scif, a container (Singularity and Docker) …
docker-container
nextflow
singularity
recipe
singularity-containers
nextflow-scif
nextflow-pipelines
docker-image
scif-recipe
nextflow-workflow
HTML
Updated Feb 25, 2019
command line tool for general HPC functions using Singularity containers
singularity
singularity-container
singularity-containers
container-management
flask
python
containers
CSS
Updated May 1, 2017
Singularity containers for Cylc
Roff
Updated Jan 31, 2019
singularity container tools for continuous integration and quality assessment
Python
Updated Jan 15, 2019
these are the build scripts run by the robot builders, chosen by the user for a given build
CSS
Updated Mar 22, 2018
Sarek: a complete open source pipeline to detect germline, or somatic variants from WGS data
Modular application recipes for the Scientific Filesystem (SCIF)
singularity
singularity-containers
singularity-container
open-science
scientific-containers
apps
sci-f
CSS
Updated Feb 1, 2018
VEP environments containerized for singularity
Shell
Updated Aug 23, 2018
Optimize workflow for binning metagenomic short reads from multiple samples
Nextflow
Updated Sep 3, 2018
Some HPC Singularity containers
Shell
Updated May 7, 2018
Nextflow + Singularity environments containerized
Dockerfile
Updated Aug 2, 2018
containers-ftw version of https://www.kaggle.com/c/flavours-of-physics
Python
Updated Sep 18, 2017
Stuff related to integrating EasyBuild & Singularity
Forked from
easybuilders/eb-singularity
Updated Jul 13, 2017
singularity image for graspit with python 3
Shell
Updated Mar 5, 2017
Singularity Images for neurodebian
Updated Feb 17, 2017
A Fork of YeoLab's cellrangerdev Singularity File
Updated Jun 26, 2018
Singularity image for (last working verison) of OpenSees
Updated Feb 8, 2017
Singularity containers for running COVISE, OpenCOVER, and Vistle
Shell
Updated Nov 16, 2018
bcftools singularity container
singularity
singularity-containers
singularity-hub
bcftools
ngs
next-generation-sequencing
vcf
vcftools
htslib
Shell
Updated Nov 8, 2018
My presentations made with compile-latex
TeX
Updated Feb 11, 2019
Singularity builder to build, install, and update Singularity software on different platforms

