Topic: singularity-containers

nextflow-io / nextflow

A DSL for data-driven computational pipelines

bioinformatics workflow-engine pipeline pipeline-framework nextflow cloud data-flow groovy sge slurm aws docker singularity hpc singularity-containers reproducible-science reproducible-research

Groovy Updated Mar 27, 2019 14 issues need help

singularityhub / singularityhub.github.io

40

Container tools for scientific computing!

singularity-containers container containers registry website documentation hub

HTML Updated Jan 7, 2019

singularityhub / singularity-python

33

command line tool for working with singularity hub and singularity containers

container containers singularity-containers hpc linux

Python Updated May 19, 2018

singularityhub / sregistry

28

server for storage and management of singularity images

singularityhub singularity singularity-containers containers management registry

JavaScript Updated Feb 25, 2019 5 issues need help

NIH-HPC / singularity-examples

10

example singularity definition files and demos

singularity-containers

Shell Updated Jun 14, 2018

vsoch / singularity-scientific-example

9

example analysis with Singularity Hub and Docker containers run on local HPC and cloud providers

singularity-containers hpc gce google-compute aws ec2 singularity genomics

Forked from cjprybol/singularity-testing Jupyter Notebook Updated Aug 10, 2017

intel / HPC-containers-from-Intel

9

Intel HPC Containers using Singularity

hpc cluster singularity-containers cloud

Shell Updated Oct 22, 2018

sci-f / sci-f.github.io

6

The Scientific Filesystem Specification and Documentation

competitive containers singularity singularity-containers reproducibility science

CSS Updated Nov 22, 2018

mbhall88 / Singularity_recipes

6

Repository with all my Singularity recipes

singularity-containers singularity-hub singularity nanopore bioinformatics

Updated Feb 21, 2019

BU-ISCIII / nextflow-scif

5

This is a demo about how to develop and deploy a pipeline using nextflow, scif, a container (Singularity and Docker) …

docker-container nextflow singularity recipe singularity-containers nextflow-scif nextflow-pipelines docker-image scif-recipe nextflow-workflow

HTML Updated Feb 25, 2019

vsoch / tunel

2

command line tool for general HPC functions using Singularity containers

singularity singularity-container singularity-containers container-management flask python containers

CSS Updated May 1, 2017

kinow / cylc-singularity

2

Singularity containers for Cylc

singularity cylc docker containers workflow scheduler singularity-container singularity-containers

Roff Updated Jan 31, 2019

singularityhub / stools

2

singularity container tools for continuous integration and quality assessment

singularity containers singularity-containers qa scanning ci continuous-integration clair

Python Updated Jan 15, 2019

singularityhub / builders

2

these are the build scripts run by the robot builders, chosen by the user for a given build

container tools singularity builder singularity-containers

CSS Updated Mar 22, 2018

MaxUlysse / Sarek

2

Sarek: a complete open source pipeline to detect germline, or somatic variants from WGS data

pipeline nextflow bioinformatics genomics next-generation-sequencing cancer workflow docker singularity singularity-containers reproducible-science reproducible-research

Forked from SciLifeLab/Sarek Nextflow Updated Mar 26, 2019

sci-f / apps

1

Modular application recipes for the Scientific Filesystem (SCIF)

singularity singularity-containers singularity-container open-science scientific-containers apps sci-f

CSS Updated Feb 1, 2018

CHRUdeLille / vep_containers

1

VEP environments containerized for singularity

singularity-containers singularity-hub ensembl-vep recipes singularity

Shell Updated Aug 23, 2018

QuentinLetourneur / Let-it-bin

1

Optimize workflow for binning metagenomic short reads from multiple samples

nextflow binning metagenomic-analysis singularity-containers

Nextflow Updated Sep 3, 2018

Smahane / HPC-Container

Some HPC Singularity containers

hpc singularity singularity-containers cloud cluster

Shell Updated May 7, 2018

CHRUdeLille / nextflowgularity

Nextflow + Singularity environments containerized

singularity-containers singularity-hub nextflow recipes singularity

Dockerfile Updated Aug 2, 2018

sci-f / flavours-of-physics.scif

containers-ftw version of https://www.kaggle.com/c/flavours-of-physics

containers-ftw mu tau physics competition containers singularity-containers

Python Updated Sep 18, 2017

singularityware / eb-singularity

Stuff related to integrating EasyBuild & Singularity

easy-build containers singularity singularity-containers hpc

Forked from easybuilders/eb-singularity Updated Jul 13, 2017

researchapps / graspit

singularity image for graspit with python 3

singularity singularity-containers

Shell Updated Mar 5, 2017

singularityhub / neurodebian

Singularity Images for neurodebian

neurodebian singularity-container singularity-containers

Updated Feb 17, 2017

marcc-hpc / cellrangerdev

A Fork of YeoLab's cellrangerdev Singularity File

hpc singularity singularity-containers marcc-systems

Updated Jun 26, 2018

researchapps / opensees

Singularity image for (last working verison) of OpenSees

singularity-container singularity-containers opensees

Updated Feb 8, 2017

vistle / singularity

Singularity containers for running COVISE, OpenCOVER, and Vistle

singularity-containers visualization hpc

Shell Updated Nov 16, 2018

CHRUdeLille / bcftools_containers

bcftools singularity container

singularity singularity-containers singularity-hub bcftools ngs next-generation-sequencing vcf vcftools htslib

Shell Updated Nov 8, 2018

MaxUlysse / Presentations

My presentations made with compile-latex

nextflow singularity-containers docker beamer latex

TeX Updated Feb 11, 2019

ArangoGutierrez / singularity-builder

Singularity builder to build, install, and update Singularity software on different platforms

linux singularity-containers continuous-integration

Forked from singularityware/singularity-builder Shell Updated May 19, 2017

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singularity-containers

Repositories 36