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Comment: removeBatchEffect(): Preserving a continuous biological variable that differs ac by Vinesh • 0

Thank you very much for your response and for clarifying the purpose of the `design` argument. That explanation was very helpful. Just to …

Comment: Issues with downloading biomaRt - SeqInfo and S4 Vectors by johnwashing926 • 0

Hello, the error usually means R is still loading an older version of S4Vectors (0.47.0). Restart your R session, remove the old package, a…

Comment: Change in values using edgeR::cpm() between RELEASE_3_22 and RELEASE_3_23 by Gordon Smyth 53k

I'm having a look at this Stevie and will reply when I can give a firm recommendation. In edgeR 4.10, I tried to pin the offset more firmly…

Comment: Change in values using edgeR::cpm() between RELEASE_3_22 and RELEASE_3_23 by Stevie Pederson • 0

Sorry, I forgot my sessionInfo() ``` sessionInfo() R version 4.6.1 (2026-06-24) Platform: x86_64-pc-linux-gnu Running under: Ubuntu 24.04.…

Answer: removeBatchEffect(): Preserving a continuous biological variable that differs ac by Gordon Smyth 53k

removeBatchEffects() works the same way regardless of whether the variables describing the experimental conditions are continuous or not. Y…

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Answer: Unable to install AnnotationHub

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