Results for 'Modelling systems'

292+ found
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  1. Model systems in developmental biology.Jessica A. Bolker - 1995 - Bioessays 17 (5):451-455.
    The practical criteria by which developmental biologists choose their model systems have evolutionary correlates. The result is a sample that is not merely small, but biased in particular ways, for example towards species with rapid, highly canalized development. These biases influence both data collection and interpretation, and our views of how development works and which aspects of it are important.
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  2.  99
    Model systems in stem cell biology.Jason Scott Robert - 2004 - Bioessays 26 (9):1005-1012.
    Stem cell scientists and ethicists have focused intently on questions relevant to the developmental stage and developmental capacities of stem cells. Comparably less attention has been paid to an equally important set of questions about the nature of stem cells, their common characteristics, their non‐negligible differences and their possible developmental species specificity. Answers to these questions are essential to the project of justly inferring anything about human stem cell biology from studies in non‐human model systems—and so to the possibility (...)
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  3. Memory is a modeling system.Sara Aronowitz - 2018 - Mind and Language 34 (4):483-502.
    This paper aims to reconfigure the place of memory in epistemology. I start by rethinking the problem that memory systems solve; rather than merely functioning to store information, I argue that the core function of any memory system is to support accurate and relevant retrieval. This way of specifying the function of memory has consequences for which structures and mechanisms make up a memory system. In brief, memory systems are modeling systems. This means that they generate, update (...)
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  4.  61
    Epistemic Drift in Mind-Model Systems.Anders Søgaard, Nina Rajcic & Ava Elizabeth Scott - 2026 - Minds and Machines 36 (1):18.
    LLMs have been shown to induce representations akin to real-world information structures. According to the standard account, this is because LLMs model the human mind, and minds model the world. Thus, LLMs and minds share properties that ultimately converge upon similar structures. We contribute to this discourse in two ways: a) We argue for an alternative account: LLMs model minds, and minds model worlds, but minds also model LLMs, which in turn extend the capacities of minds. In sum, the world-mind-LLM (...)
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  5. Relational model systems: The craft of logic.Raphael Stern - 1984 - Synthese 60 (2):225 - 252.
  6. Modeling systems-level dynamics: Understanding without mechanistic explanation in integrative systems biology.Miles MacLeod & Nancy J. Nersessian - 2015 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 49:1-11.
  7.  41
    Semiotic modeling systems: The contribution of Thomas A. Sebeok.Bennetta Jules-Rosette - 1993 - Semiotica 96 (3-4):269-284.
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  8.  73
    The Model System of Contemporary Literary Criticism.Mary Poovey - 2001 - Critical Inquiry 27 (3):408-438.
  9.  57
    Modelling systems with intentional dynamics: A lesson from quantum mechanics.R. E. Shaw, E. E. Kadar & Jeffrey Kinsella-Shaw - 1994 - In Karl H. Pribram, Origins: Brain and Self Organization. Lawrence Erlbaum. pp. 53--101.
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  10. Relational model systems.Raphael Stern - 1983 - In Alex Orenstein & Rafael Stern, Developments in Semantics. Haven. pp. 2--114.
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  11.  38
    A model system approach to memory.Richard F. Thompson - 1989 - In P. Solomon, G. Goethals, Clarence M. Kelley & Ron Stephens, Memory: Interdisciplinary Approaches. Springer Verlag. pp. 17--32.
  12.  63
    A Model System Works: Looking Deeper than Suicide.Stuart J. Youngner - 1993 - Journal of Clinical Ethics 4 (4):332-333.
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  13. The vertebrate limb: A model system to study the Hox/hom gene network during development and evolution.Denis Duboule - 1992 - Bioessays 14 (6):375-384.
    The potential of the vertebrate limb as a model system to study developmental mechanisms is particularly well illustrated by the analysis of the Hox gene network. These genes are probably involved in the establishment of patterns encoding positional information. Their functional organisation during both limb and trunk development are very similar and seem to involve the progressive activation in time, along the chromosome, of a battery of genes whose products could differentially instruct those cells where they are expressed. This process (...)
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  14. Is language a primary modeling system? On Juri Lotman’s concept of semiosphere.Han-Liang Chang - 2003 - Sign Systems Studies 31 (1):9-22.
    Juri Lotman’s well-known distinction of primary modeling system versus secondary modeling system is a lasting legacy of his that has been adhered to, modified, and refuted by semioticians of culture and nature. Adherence aside, modifications and refutations have focused on the issue whether or not language is a primary modeling system, and, if not, what alternatives can be made available to replace it. As Sebeok would concur, for both biosemiosis and anthroposemiosis, language can only be a secondary modeling system on (...)
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  15.  79
    Deubiquitinating Enzymes in Model Systems and Therapy: Redundancy and Compensation Have Implications.Sarah Zachariah & Douglas A. Gray - 2019 - Bioessays 41 (11):1900112.
    The multiplicity of deubiquitinating enzymes (DUBs) encoded by vertebrate genomes is partly attributable to whole genome duplication events that occurred early in chordate evolution. By surveying the literature for the largest family of DUBs (the ubiquitin-specific proteases), extensive functional redundancy for duplicated genes has been confirmed as opposed to singletons. Dramatically conflicting results have been reported for loss of function studies conducted through RNA interference as opposed to inactivating mutations, but the contradictory findings can be reconciled by a recently proposed (...)
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  16. Science without Laws: Model Systems, Cases, Exemplary Narratives.Angela N. H. Creager, Elizabeth Lunbeck, M. Norton Wise, Barbara Herrnstein Smith & E. Roy Weintraub (eds.) - 2020 - New York, USA: Duke University Press.
    Physicists regularly invoke universal laws, such as those of motion and electromagnetism, to explain events. Biological and medical scientists have no such laws. How then do they acquire a reliable body of knowledge about biological organisms and human disease? One way is by repeatedly returning to, manipulating, observing, interpreting, and reinterpreting certain subjects—such as flies, mice, worms, or microbes—or, as they are known in biology, “model systems.” Across the natural and social sciences, other disciplinary fields have developed canonical examples (...)
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  17.  85
    Culture and Modeling Systems.Cesare Segre & John Meddemmen - 1978 - Critical Inquiry 4 (3):525-537.
    Despite the persistent affirmations of the ill-informed, the great promise of semiotics is the possibility it represents of welding together both language and text analysis and the analysis of pragmatic and ideological context. It is merely a matter of judicious planning if attention has so far been directed primarily to distinctive aspects of techniques and texts rather than to the general character of the frames of reference within which they operate. And yet, as we know, investigations of the total functioning (...)
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  18. What is so special about smell? Olfaction as a model system in neurobiology.Ann-Sophie Barwich - 2015 - Postgraduate Medical Journal 92:27-33.
    Neurobiology studies mechanisms of cell signalling. A key question is how cells recognise specific signals. In this context, olfaction has become an important experimental system over the past 25 years. The olfactory system responds to an array of structurally diverse stimuli. The discovery of the olfactory receptors (ORs), recognising these stimuli, established the olfactory pathway as part of a greater group of signalling mechanisms mediated by G-protein-coupled receptors (GPCRs). GPCRs are the largest protein family in the mammalian genome and involved (...)
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  19. Society Ladenness Model: System-Parametric Analysis.Alla Nerubasska, Volha Paulava, Valentyna Bogachenko & Oresta Lopuha - 2021 - Postmodern Openings 12 (1Sup1):271-286.
    The system-parametric method developed by A. Uyemov allows creating a model of the contemporary bifurcational reality. There are many terms adopted from other sciences which are often used in postmodern philosophy. Bifurcation is one of such terms adopted from synergetics. In this article emphasis is placed on the contemporary time which is bifurcational in its essence. Using the key thesis of the systems method which states that any object can be presented as a system, we propose to create a (...)
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  20. Science without Laws. Model Systems, Cases, Exemplary Narratives.Angela N. H. Creager, Elizabeth Lunbeck & M. Norton Wise - 2008 - Journal of the History of Biology 41 (1):199-202.
  21. Aging and memory: A model systems approach.P. R. Solomon & W. W. Pendlebury - 1992 - In L. R. Squire & N. Butters, Neuropsychology of Memory. Guilford Press. pp. 262--276.
     
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  22. The biochemistry of memory consolidation: A model system for the philosophy of mind.Kenneth Aizawa - 2007 - Synthese 155 (1):65-98.
    This paper argues that the biochemistry of memory consolidation provides valuable model systems for exploring the multiple realization of psychological states.
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  23.  98
    The place of art among other modelling systems.Juri Lotman - 2011 - Sign Systems Studies 39 (2/4):249-269.
    This article by Juri Lotman from the third volume of Trudy po znakovym sistemam (Sign Systems Studies) in 1967, deals with the problem of artistic modelling. The general working questions are whether art displays any characteristic traits that are common for all modelling systems and which could be the specific traits that can distinguish art from other modelling systems. Art is seen as a secondary modelling system, more precisely, as a play-type model, which (...)
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  24.  71
    Thumper the Infinitesimal Rabbit: A Fictionalist Perspective on Some “Unimaginable” Model Systems in Biology.Brian McLoone - 2019 - Philosophy of Science 86 (4):662-671.
    Fictionalists believe that scientific models are about model systems that are imaginary. Michael Weisberg has claimed that fictionalism is indefensible because many scientific models are about model systems that are unimaginable. According to a certain account of imagination, what Weisberg says is plausible. According to another, more defensible account of imagination, it is not. I discuss these issues within the context of an allegedly unimaginable model system in ecology, but the conclusions I draw are more general. I then (...)
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  25.  5
    Schemata as the primary modelling system of culture: Prospects for the study of nonverbal communication.Jui-Pi Chien - 2014 - Sign Systems Studies 42 (1):31-41.
    The art historian Ernst Gombrich asserted that both artists and viewers are constrained by specific cultural mental sets within which they operate: he used “schemata” to refer to both actual sketches and our mental sets. In mapping the mechanism of culture, Juri Lotman situated both language and the “schematized image” at the centre of semiospheres: they function to introduce unity and eliminate contradictions. Schemata have obviously served as both the cause and the result of human knowledge, some loosely constructed yet (...)
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  26.  36
    Legal system: can one speak about secondary modeling system in law?Vadim Verenich - 2003 - International Journal for the Semiotics of Law - Revue Internationale de Sémiotique Juridique 16 (1):77-100.
    The essay examines possible affinities betweenTartu-Moscow school of cultural semiotics andlegal semiotics. The introduction briefly setsout a historical dimension of the ideologicalintegration of Tartu-Moscow semiotics (inbroader context Tartu semiotics) into thegeneral framework of legal semiotics. It arguesthat there was a `real' historical mediationbetween the members of Tartu-Moscow schoolsemiotic circle and legal scholars from Tartu.The acceptance of such a bridging link betweenlegal academic community and semioticians couldgive further impetus to construction of aspecial model of `Tartu legal semiotics'.The development of Tartu-Moscow `legalsemiotics' (...)
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  27.  51
    Georg Striedter, Model Systems in Biology: History, Philosophy, and Practical Concerns, Cambridge, MA: MIT Press, 2022.Nina Atanasova - 2023 - History and Philosophy of the Life Sciences 45 (3):1-4.
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  28. Yeast as a model system for understanding the control of DNA replication in eukaryotes.Rachel Bartlett & Paul Nurse - 1990 - Bioessays 12 (10):457-463.
    In the yeasts Saccharomyces cerevisiae and Schizosaccharomyces pombe, the initiation of DNA replication is controlled at a point called START. At this point, the cellular environment is assessed; only if conditions are appropriate do cells traverse START, thus becoming committed to initiate DNA replication and complete the remainder of the cell cycle. The cdc2+ / CDC28+ gene, encoding the protein kinase p34, is a key element in this complex control. The identification of structural and functional homologues of p34 suggests that (...)
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  29.  63
    Bacteriophage lambda as a model system.Allan M. Campbell - 1986 - Bioessays 5 (6):277-280.
  30.  95
    Computational Psychometrics for Modeling System Dynamics during Stressful Disasters.Pietro Cipresso, Alessandro Bessi, Desirée Colombo, Elisa Pedroli & Giuseppe Riva - 2017 - Frontiers in Psychology 8.
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  31.  66
    Myelin mutants: Model systems for the study of normal and abnormal myelination.Ian R. Griffiths - 1996 - Bioessays 18 (10):789-797.
    Spontaneous mutations that perturb myelination occur in a range of species including man, and together with engineered mutations have been used to study disease, normal myelination and axon/glial inter‐relationships. Only a minority of the currently defined mutations have an apparently simple pathogenesis due to lack of a functional protein. Mutations in the myelin basic protein gene lead to a lack of protein, resulting in changes in the structure of myelin, which can be rescued by transgenic complementation. The pathogenesis of autosomal (...)
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  32.  10
    Medakafish as a model system for vertebrate developmental genetics.Yuji Ishikawa - 2000 - Bioessays 22 (5):487-495.
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  33.  57
    Objective Worlds, Modeling Systems, and Interpretants.Júlio Jéha - 1993 - Semiotics:17-22.
  34.  87
    Hormone signaling in evolution and development: a non‐model system approachs.Andreas Heyland, Jason Hodin & Adam M. Reitzel - 2005 - Bioessays 27 (1):64-75.
    Cooption and modularity are informative concepts in evolutionary developmental biology. Genes function within complex networks that act as modules in development. These modules can then be coopted in various functional and evolutionary contexts. Hormonal signaling, the main focus of this review, has a modular character. By regulating the activities of genes, proteins and other cellular molecules, a hormonal signal can have major effects on physiological and ontogenetic processes within and across tissues over a wide spatial and temporal scale. Because of (...)
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  35.  12
    Monkey Decision Making as a Model System for Human Decision Making.Adina L. Roskies - 2014 - In Alfred R. Mele, Surrounding Free Will: Philosophy, Psychology, Neuroscience. New York, US: OUP Usa. pp. 231-254.
    The brain sciences are providing new means of investigating brain processes involved in decision making. However, understanding decision making at the computational level requires methods unsuitable for use in humans. This chapter argues that monkeys are attractive models of human decision making and that neurophysiological recordings in monkeys can provide insight into human decision processes. The chapter explores a number of objections to the relevance of monkey data to understanding human decision making, including the importance of language and consciousness, and (...)
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  36.  72
    Understanding Human Lung Development through In Vitro Model Systems.Renee F. Conway, Tristan Frum, Ansley S. Conchola & Jason R. Spence - 2020 - Bioessays 42 (6):2000006.
    An abundance of information about lung development in animal models exists; however, comparatively little is known about lung development in humans. Recent advances using primary human lung tissue combined with the use of human in vitro model systems, such as human pluripotent stem cell‐derived tissue, have led to a growing understanding of the mechanisms governing human lung development. They have illuminated key differences between animal models and humans, underscoring the need for continued advancements in modeling human lung development and (...)
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  37.  48
    Studying Invention: The Hand Tool as a Model System.Antolin M. Llorente, Stacey Dixon & Robert J. Weber - 1993 - Science, Technology and Human Values 18 (4):480-505.
    Invention is an important source of technology, and, to understand invention, one needs a model system or prototype. A candidate model system is the hand tool. Using the hand tool as an example, the authors present a systematic approach to invention, dealing with description, classification, and joining or integrating simpler forms. Heuristics for when to integrate are presented. Finally, the authors introduce a new way of thinking about hand tools: simple spatial transformations applied to an abstract element make possible the (...)
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  38.  84
    The pea aphid, Acyrthosiphon pisum: an emerging genomic model system for ecological, developmental and evolutionary studies.Jennifer A. Brisson & David L. Stern - 2006 - Bioessays 28 (7):747-755.
    Aphids display an abundance of adaptations that are not easily studied in existing model systems. Here we review the biology of a new genomic model system, the pea aphid, Acyrthosiphon pisum. We then discuss several phenomena that are particularly accessible to study in the pea aphid: the developmental genetic basis of polyphenisms, aphid–bacterial symbioses, the genetics of adaptation and mechanisms of virus transmission. The pea aphid can be maintained in the laboratory and natural populations can be studied in the (...)
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  39. Induced pluripotent stem cells as new model systems in oncology.Lucie Laplane, Allan Beke, William Vainchenker & Eric Solary - 2015 - Stem Cells 33:2887-2892.
    The demonstration that pluripotent stem cells could be generated by somatic cell reprogramming led to wonder if these so-called induced pluripotent stem (iPS) cells would extend our investigation capabilities in the cancer research field. The first iPS cells derived from cancer cells have now revealed the benefits and potential pitfalls of this new model. iPS cells appear to be an innovative approach to decipher the steps of cell transformation as well as to screen the activity and toxicity of anticancer drugs. (...)
     
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  40.  86
    Vienna–Chicago: The cultural transformation of the model system of the un‐opposed molar.Xianghong Luan & Thomas G. H. Diekwisch - 2007 - Bioessays 29 (8):819-830.
    The discussion over the roles of genes and environment on the phenotypical specification of organisms has held a central role in science philosophy since the late 19th century and has re‐emerged in today's debate over genetic determinism and developmental plasticity. In fin‐de‐siecle Vienna, this debate coincided with a philosophical debate over empiricism/materialism versus idealism/vitalism. Turn‐of‐the‐century Vienna's highly interdisciplinary environment was also the birthplace for the model system of the un‐opposed molar. The un‐opposed molar system features new tissue formation at the (...)
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  41.  50
    Melanoma formation in xiphophorus: A model system for the role of receptor tyrosine kinases in tumorigenesis.Barbara Malitschek, Dorothee Förnzler & Manfred Schartl - 1995 - Bioessays 17 (12):1017-1023.
    Cancer is one of the most frequent fatal human diseases. It is a genetic disease, and molecular analysis of the genes involved revealed that they belong to several distinct classes of molecules, one of which is the receptor tyrosine kinases. Neoplastic transformation is regarded as the result of a multistep process and, in most cases, it is hard to evaluate what the initial events in tumor formation are. What makes it difficult to approach this question is the paucity of animal (...)
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  42. Empowering plant evo-devo: Virus induced gene silencing validates new and emerging model systems.Verónica S. Di Stilio - 2011 - Bioessays 33 (9):711-718.
  43.  94
    Semioticians Make Strange Bedfellows! Or, Once Again: “Is Language a Primary Modelling System?”. [REVIEW]Han-Liang Chang - 2009 - Biosemiotics 2 (2):169-179.
    Like other sciences, biosemiotics also has its time-honoured archive, consisting of writings by those who have been invented and revered as ancestors of the discipline. One such example is Jakob von Uexküll. As to the people who ‘invented’ him, they are either, to paraphrase a French cliché, ‘agents du cosmopolitisme sémiotique’ like Thomas Sebeok, or de jure and de facto progenitor like Thure von Uexküll. In the archive is the special issue of Semiotica 42. 1 (1982) edited by the late (...)
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  44. Model templates within and between disciplines: from magnets to gases – and socio-economic systems.Tarja Knuuttila & Andrea Loettgers - 2016 - European Journal for Philosophy of Science 6 (3):377-400.
    One striking feature of the contemporary modelling practice is its interdisciplinary nature. The same equation forms, and mathematical and computational methods, are used across different disciplines, as well as within the same discipline. Are there, then, differences between intra- and interdisciplinary transfer, and can the comparison between the two provide more insight on the challenges of interdisciplinary theoretical work? We will study the development and various uses of the Ising model within physics, contrasting them to its applications to socio-economic (...)
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  45. A System Dynamics Model of Greedy Desire.Charles X. Yang - manuscript
    Greedy desire is the core driver of human civilizational crisis, yet no unified dynamic model spanning the neural, social, and thermodynamic levels has been developed. This paper employs System Dynamics as its methodological framework, integrating evolutionary neuroscience, complex systems theory, and thermodynamics to construct a Three-Level Greedy Positive-Feedback Model (3L-GFM). At the neural level, the model captures the dual positive-feedback structure of the dopaminergic reward circuit and the amygdala anxiety system, along with the negative-feedback intervention mechanism mediated by mindfulness (...)
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  46. Science without Laws: Model Systems, Cases, Exemplary Narratives. [REVIEW]Lorraine Daston - 2008 - Common Knowledge 14 (3):494-494.
  47.  65
    Science without laws: model systems, cases, exemplary narratives - Edited by Angela N. H. Creager, Elizabeth Lunbeck and N. Norton Wise. [REVIEW]Joan Steigerwald - 2009 - Centaurus 51 (2):172-173.
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  48.  63
    Arabidopsis to Zebrafish: A Commentary on "Rosetta Stone" Model Systems in the Biological Sciences.Howard Gest - 1995 - Perspectives in Biology and Medicine 39 (1):77-85.
  49. Minimal models of consciousness: Understanding consciousness in human and non-human systems.Wanja Wiese - manuscript
    Should models of consciousness be detailed _mechanistic_ models of particular types of systems, or should they be _minimal_ models that abstract away from the underlying mechanistic details and provide generalisations? Detailed mechanistic models may afford a complete and precise account of consciousness in human beings and other, physiologically similar mammals. But they do not provide a good model of consciousness in other animals, such as non-vertebrates, let alone artificial systems. Minimal models can be applicable to a wide range (...)
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  50.  56
    Individual differences in subtle awareness and levels of awareness: Olfaction as a model system.Gary E. Schwartz - 2000 - In Robert G. Kunzendorf & Benjamin Wallace, Individual Differences in Conscious Experience. Amsterdam: John Benjamins. pp. 209.
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