We present SASC, Self-Adaptive Semantic Crossover, a new class of crossover operators for genetic programming. SASC operators are designed to induce the emergence and then preserve good building-blocks, using metacontrol techniques based on semantic compatibility measures. SASC performance is tested in a case study concerning the replication of investment funds.

The notion of a genetic program has been widely criticized by both biologists and philosophers. But the debate has revolved around a narrow conception of what programs are and how they work, and many criticisms are linked to this same conception. To remedy this, I outline a modern and more apt idea of a program that possesses many of the features critics thought missing from programs. Moving away from over-simplistic conceptions of programs opens the way to a more fruitful (...) interplay of ideas between the complexity of biology and our most complex engineering discipline. (shrink)

This paper outlines a critique of the use of the genetic variance–covariance matrix (G), one of the central concepts in the modern study of natural selection and evolution. Specifically, I argue that for both conceptual and empirical reasons, studies of G cannot be used to elucidate so-called constraints on natural selection, nor can they be employed to detect or to measure past selection in natural populations – contrary to what assumed by most practicing biologists. I suggest that the search (...) for a general solution to the difficult problem of identifying causal structures given observed correlation’s has led evolutionary quantitative geneticists to substitute statistical modeling for the more difficult, but much more valuable, job of teasing apart the many possible causes underlying the action of natural selection. Hence, the entire evolutionary quantitative genetics research program may be in need of a fundamental reconsideration of its goals and how they correspond to the array of mathematical and experimental techniques normally employed by its practitioners. (shrink)

The fundamental paradigm of molecular biology posits that 64 codons encode 20 canonical amino acids and stop signals, necessitating codon degeneracy. However, the assumption of functional equivalence among synonymous codons is flawed. We posit that this very non-equivalence—manifested in translation kinetics and fidelity—provides a novel therapeutic avenue. This paper explores two sophisticated strategies to exploit the genetic code's redundancy: first, **Codon Optimization and Rescripting**, which replaces non-optimal codons to enhance the production of functional proteins; and second, **Pharmacologically-Induced Translational Readthrough**, (...) which deliberately manipulates the ribosome to ignore premature termination codons. By moving beyond the mere amino acid sequence to the informational context of the codon itself, these approaches offer a promising framework for treating a wide array of genetic diseases caused by missense and nonsense mutations. (shrink)

The biomedical literature makes extensive use of the concept of a genetic program. So far, however, the nature of genetic programs has received no satisfactory elucidation from the standpoint of computer science. This unsettling omission has led to doubts about the very existence of genetic programs, on the grounds that gene regulatory networks lack a predetermined schedule of execution, which may seem to contradict the very idea of a program. I show, however, that we can make perfect (...) sense of genetic programs, if only we abandon the preconception that all computers have a von Neumann architecture. Instead, genetic programs instantiate the computational architecture of Post–Newell Production Systems. That is, genetic programs are unordered sets of conditional instructions, instructions that fire independently when their conditions are matched. For illustration I present a paradigm Production System that regulates the functioning of the well-known lac operon of E. coli. On close reflection it turns out that not only genes, but also proteins encode instructions. I propose, therefore, to rename genetic programs to biomolecular programs. Biomolecular and/or genetic programs, and the cellular computers than run them, are to be understood not as von Neumann computers, but as Post–Newell production systems. (shrink)

In this new post-genomic age of medicine and biomedical technology, there will be novel approaches to understanding disease, and to finding drugs and cures for diseases. Hundreds of new “disease genes” thought to be the causative agents of various genetic maladies will be identified and added to the list of hundreds of such genes already identified. Based on this knowledge, many new genetic tests will be developed and used in genetic screening programs. Genetic screening is the (...) foundation upon which reproductive technologies such as pre-natal diagnosis (PND) and preimplantation genetic diagnosis (PGD) are based. Genetic information arising from the human genome may also be used in attempts to redesign the human genetic inheritance by engineering the human germline (germline engineering). In each of these technologies—PND, PGD, and germline engineering—there are serious ethical and social concerns. Moreover, all three are eugenic in nature because they strive to control which genes are passed down to future generations. The goals of this article are threefold: 1) to introduce the science behind the three technologies; 2) to give a brief overview of eugenics in the past century and show how these genetic technologies are eugenic; and 3) to present a vision of social justice that rejects the genetic determinism upon which eugenics is based and embraces a holistic, ecological view of nature and humanity. (shrink)

Distributive justice is one of the central questions of contemporary moral and political philosophy. Discussions on this topic are often presented as a confrontation between two groups of thinkers: libertarians and luck egalitarians. The former emphasize the dependence of the existing distribution on the individual choice and personal responsibility of people, and therefore are skeptical about various redistribution programs. The latter, on the contrary, emphasize the influence of morally arbitrary luck on the economic situation of people, and therefore welcome redistributive (...) measures to compensate for this brute luck. Left-libertarian claims to reconcile these two types of moral considerations. The classical left-libertarian point of view seeks to offset the influence of brute luck through an egalitarian distribution of the benefits of owning natural resources that are independent of anyone’s choice and responsibility. However, this position does not sufficiently take into account the influence of other factors of brute luck and, in particular, genetic endowments on the distribution of economic wealth. This article discusses three approaches that allow left-libertarians to take into account the factor of genetic luck in interpersonal distribution. First, it is Hillel Steiner’s proposal to attribute genetic information to natural resources, the benefits of which are subject to egalitarian redistribution. Second, it is the concept of equal opportunity for welfare by Peter Vallentyne, Michael Otsuka and Eric Roark. Third, it is the universal dominance criterion of Philippe Van Parijs and Kasper Ossenblok. The first two approaches face a number of moral and practical difficulties, but the third approach is able to overcome them. Thus, the universal dominance criterion is the most promising way to reconcile left-libertarianism and justice in the distribution of genetic endowments. (shrink)

[English version below] Diese Stellungnahme zielt darauf ab, Empfehlungen für akzeptable Rahmenbedingungen eines Genomischen-Neugeborenen-Screening (gNBS)-Programms in Deutschland zu formulieren, darunter Empfehlungen zu Auswahlkriterien für Zielkrankheiten und zum Management eines gNBS-Programms sowie zur gesetzlichen Neuregulierung. Sie ist Ergebnis eines dreijährigen Forschungsprojektes, das an den Universitäten Heidelberg und Mannheim durchgeführt wurde. An dem interdisziplinären Projekt beteiligt waren Forscher:innen aus den Bereichen Kinder- und Jugendmedizin, Humangenetik, Rechtswissenschaft, Medizinische Psychologie und Medizinethik sowie Vertreter:innen von Patient:innen-Organisationen (Kindernetzwerk e.V. und Deutsche Interessengemeinschaft Phenylketonurie und verwandte angeborene (...) Stoffwechselstörungen e.V.). Das Projekt wurde vom Bundesministerium für Bildung und Forschung (BMBF; seit 2025 Bundesministerium für Forschung, Technologie und Raumfahrt: BMFTR) gefördert und trägt den Titel NEW_LIVES („Genomic NEWborn screening programs – Legal Implications, Value, Ethics and Society” – „Genomische Neugeborenen-Screening-Programme – Rechtliche Implikationen, Werte, Ethik und Gesellschaft“). Die Stellungnahme beginnt mit einführenden Kapiteln zum Hintergrund des gNBS aus Sicht der verschiedenen Fachbereiche und aus Sicht der Gesellschaft, gefolgt von konkreten Empfehlungen für ein zukünftig mögliches gNBS-Pro- gramm in Deutschland. In der Einleitung (1.) werden erste Ergebnisse bisheriger Forschungsprojekte zum gNBS zusammengefasst und die Zielsetzung und Methode, einschließlich der Rolle von Patient:innen-Vertreter:innen bei der Erarbeitung der Stellungnahme werden beschrieben. In Abschnitt 2 („Medizinischer Hintergrund“) werden Entwicklung, Umfang und Ablauf des derzeitigen Neugeborenen-Screening (NBS)-Programms in Deutschland beschrieben und die Besonderheiten eines gNBS-Programms erläutert. Abschnitt 3 („Perspektive von Patient:innen, Eltern und medizinischem Personal“) fasst die Ergebnisse der sozialempirischen Studien zusammen, die im Rahmen des Projektes NEW_LIVES durchgeführt wurden (Fokusgruppen, bevölkerungs-repräsentative Befragung, querschnittliche Online-Befragung) und vergleicht die Ergebnisse mit anderen, internationalen Studien. Abschnitt 3 enthält außerdem eine gemeinsame Stellungnahme der beiden Patient:innen-Organisationen, die am Projekt NEW_LIVES mitgewirkt haben, zum gNBS. Abschnitt 4 („Genomisches Neugeborenen-Screening aus rechtlicher Sicht“) skizziert den rechtlichen Regulierungsrahmen zum gNBS in Deutschland. Abschnitt 5 („Genomisches Neugeborenen-Screening aus ethischer Sicht“) benennt zentrale ethische Herausforderungen des gNBS und formuliert ethische Orientierungsmaßstäbe für ein zukünftiges gNBS-Programm in Deutschland. Da die Neugeborenen diejenigen sind, die an einem gNBS teilnehmen würden und davon profitieren könnten, stellt deren Kindeswohl den zentralen ethischen Orientierungsmaßstab für die Bewertung dar. Die sich in Abschnitt 6 anschließenden Empfehlungen sind aus Sicht aller an der Erarbeitung dieser Stellungnahme beteiligten Fachdisziplinen und der Patient:innen-Organisationen verfasst Darunter sind einerseits transparente Auswahlkriterien für Zielkrankheiten eines gNBS-Programms (Kriterien 1–11). Andererseits werden Empfehlungen für die Einführung, Qualitätssicherung und Nutzenbewertung eines gNBS-Programms formuliert (Kriterien 12–18). Zudem enthält diese Stellungnahme Empfehlungen zur gesetzlichen Neuregulierung. Eine Publikation der Empfehlungen auf Englisch findet sich in Schnabel-Besson et al.: “A multi-dimensional fra- mework for establishing and managing a genomic newborn screening program” (Arbeitstitel; zum Zeitpunkt des Verfassens dieser Stellungnahme in Vorbereitung; DOI der Preprint-Version: 10.1101/2025.06.17.25329 471). - This position paper has the aim of formulating recommendations for what would be an acceptable framework for a genomic newborn screening (gNBS) programme in Germany, including recommendations for selection criteria for target diseases, and for the management of a gNBS programme, as well as for revision of legislation. It is the result of a research project conducted at the Universities of Heidelberg and Mannheim over the course of three years. This interdisciplinary project brought together researchers from the fields of paediatrics and adolescent medicine, human genetics, law, medical psychology, and medical ethics, as well as representatives of patient organisations (Kindernetzwerk e.V., and Deutsche Interessenge- meinschaft Phenylketonurie und verwandte angeborene Stoffwechselstörungen e.V.). The project was funded by the German Federal Ministry of Education and Research (BMBF; since 2025 Federal Ministry of Research, Technology and Space: BMFTR) and is called NEW_LIVES (“Genomic NEWborn screening programs – Legal Implications, Value, Ethics and Society”). The position paper begins with introductory chapters on gNBS from the perspective of the different disciplines, and from a societal viewpoint, followed by concrete recommendations for a possible future gNBS programme in Germany. The Introduction (1.) summarises the initial results of previous research projects on gNBS, and describes the objectives, and methodology, including the role of patient representatives, in the development of the position paper. Section 2 (“Medical Background”) describes the development, scope, and process of the current NBS programme in Germany, and explains the specific features of a gNBS programme. Section 3 (“Perspectives of Patients, Parents, and Medical Staff”) summarizes the results of the social-empirical studies conducted as part of the NEW_LIVES project (focus groups, population-representative survey, cross-sectional online survey), and compares the results with other, international studies. Section 3 also contains a joint statement on gNBS by the two patient organisations that participated in the NEW_LIVES project. Section 4 (“Genomic Newborn Screening from a Legal Perspective”) outlines the legal regulatory framework for gNBS in Germany. Section 5 (“Genomic Newborn Screening from an Ethical Perspective”) identifies key ethical challenges of gNBS, and formulates ethical guidelines for a future gNBS programme in Germany. Since newborns are the ones who would participate in, and benefit from gNBS, their welfare represents the central ethical guideline for the evaluation. The recommendations in Section 6 are written from the perspective of all disciplines, and patient organisations involved in the development of this position paper. These recommendations reflect the consensus of the inter-, and transdisciplinary group of authors, and form the core of the position paper. They comprise 18 criteria for a possible future gNBS programme in Germany. These include, on the one hand, transparent selection criteria for target diseases of a gNBS programme (criteria 1–11). On the other hand, recommendations are formulated for the introduction, quality assurance, and benefit assessment of a gNBS programme (criteria 12–18). This position paper also contains recommendations for new legal regulations. An English version of the recommendations, including the 11 criteria for selecting target diseases and the 7 criteria for programme management can be found in Schnabel-Besson E, Dikow N, Alex K et al.: “A multidimensional framework for establishing and managing a genomic newborn screening program” (working title; in preparation at the time of writing this position paper; doi of preprint version: 10.1101/2025.06.17.25329471). (shrink)

This article presents a two level hierarchical forecasting model developed in a consulting project for a Brazilian magazine publishing company. The first level uses a VARMA model and considers econometric variables. The second level takes into account qualitative aspects of each publication issue, and is based on polynomial networks generated by Genetic Programming (GP).

The concept of an artificial womb, or ectogenesis, represents a transformative leap in reproductive technology, enabling gestation outside the human body while addressing ethical, biological, and societal challenges. Drawing from the interdisciplinary research of Minister Alexander Ohnemus, this essay outlines a conceptual blueprint for such a device, synthesizing elements from 3D bioprinting, tissue engineering, genetic augmentation, and human-machine integration. Ohnemus’s work, spanning speculative biology, AI-driven idealization, and phenotypic mitigation, provides a foundation for this blueprint. For instance, his proposals for (...) creating hybrid life forms via 3D bioprinting bypass traditional uterine gestation, allowing for controlled development from genetic replicators to mature phenotypes (Ohnemus, “Life Creation”). This blueprint envisions a modular system that incorporates bioengineered scaffolds, nutrient delivery mechanisms, genetic programming, and AI oversight, while emphasizing humanistic ethics to prevent disruptive phenotypic revolutions. By deriving directly from Ohnemus’s publications and credentials, this framework highlights the potential for safer, more equitable reproduction. (shrink)

The advancement of genome sequencing technology and its potential application in newborn screening is being discussed in various countries. Genomic newborn screening (gNBS) can provide parents with information about their child's genetic susceptibility for known disorders. However, it also presents ethical and psychosocial challenges. This study was carried out with a view toward the possible introduction of gNBS in Germany. Due to the existing challenges, it is crucial to understand different perspectives of relevant groups in Germany before implementing gNBS. (...) Four online focus groups were conducted with parents, patient representatives, and healthcare professionals to explore perceived opportunities and challenges, as well as needs regarding a potential gNBS program. Discussions with altogether 24 participants were semi-structured using a pre-defined interview guide. Sessions were audio-visually recorded and transcripts were analyzed using a structuring qualitative content analysis combining both deductive and inductive methods. Participants expressed positive views about gNBS but also reservations about a gNBS program and posed requirements for operating conditions. One salient theme that emerged was hope for certainty through gNBS in the face of numerous uncertainties. The study complements the perspective of patient representatives, providing further insight into the subject matter. This is a valuable contribution as they possess a comprehensive understanding of the medical, psychological, and ethical considerations involved. Patient representatives placed particular emphasis on the advantages of avoiding a diagnostic odyssey and the significance of support systems. The results provide first insights into different views on gNBS in Germany. These views can inform the potential preparation of a gNBS program in Germany, particularly with regard to information and consent requirements. Implications for practice, such as informing and educating parents about gNBS during pregnancy, can be derived from the study. WHAT IS KNOWN ABOUT THIS TOPIC: Previous studies have indicated that there is significant public and—more particularly parental—interest in genomic newborn screening (gNBS). However, discrepancies exist regarding preferences for the scope of reported results, including differences between the views of healthcare professionals, parents, and the public. WHAT THIS PAPER ADDS TO THE TOPIC: This study offers insights into various perspectives on the potential implementation of gNBS in Germany, highlighting divergent views of healthcare professionals and parents, while also introducing a novel and valuable contribution by including the viewpoints of patient representatives. (shrink)

This article critically examines one of the most prevalent metaphors in modern biology, namely the machine conception of the organism (MCO). Although the fundamental differences between organisms and machines make the MCO an inadequate metaphor for conceptualizing living systems, many biologists and philosophers continue to draw upon the MCO or tacitly accept it as the standard model of the organism. This paper analyses the specific difficulties that arise when the MCO is invoked in the study of development and evolution. In (...) developmental biology the MCO underlies a logically incoherent model of ontogeny, the genetic program, which serves to legitimate three problematic theses about development: genetic animism, neo-preformationism, and developmental computability. In evolutionary biology the MCO is responsible for grounding unwarranted theoretical appeals to the concept of design as well as to the interpretation of natural selection as an engineer, which promote a distorted understanding of the process and products of evolutionary change. Overall, it is argued that, despite its heuristic value, the MCO today is impeding rather than enabling further progress in our comprehension of living systems. (shrink)

This paper develops Axiom X by establishing the complete temporal architecture of the ente. The ente lives once because its duration is determined by a genetic clock encoded in DNA, the evolutionary descendant of a more primitive mechanism: the Gradient Clock. The Gradient Clock is a directional, binary, oscillatory proto‑clock that “ticks” when direction changes and perishes when direction ceases. It generates time but cannot store or inherit it. When gradients become internalized into living systems, their oscillatory logic becomes (...) encoded in DNA, giving rise to the Genetic Clock—the inheritable, synchronized temporal program that generates interior time. The ente begins when this clock activates at conception and persists only while its vital oscillations remain stable. Death is the irreversible collapse of this clock. This paper unifies gradient‑time and genetic‑time into a single temporal cosmology: life is the internalization of direction, and time is the oscillation of the genetic clock. (shrink)

Newborn screening (NBS) is an effective measure of secondary prevention. The application of genomic sequencing in population-based screening would enable further expansions of the NBS disease panel and a genomic NBS (gNBS). The selection of NBS target diseases is still based on the Wilson and Jungner screening principles from 1968, which are considered incomplete, particularly for an extension towards gNBS. The present work aims to establish a multi-dimensional framework for future gNBS programs. An interdisciplinary expert panel comprising researchers from pediatric (...) and adolescent medicine, human genetics, ethics, medical psychology, law, and patient representatives used a nominal group technique-like multi-stage consensus process to define criteria for gNBS, considering ethical, legal, and social implications, medical aspects, and patient perspectives. Overall, 18 criteria were developed, clustered into four subcategories: I. Clinical criteria (characteristics of the target disease); II. Diagnostic criteria (requirements of the test); III. Therapeutic-interventional criteria (prerequisites of the intervention); IV. Program management criteria (requirements of the program). Subcategories I–III define selection criteria for target diseases, subcategory IV defines criteria for how to establish and manage the program. In conclusion, this multi-dimensional framework serves as a well-balanced basis for developing thoroughly revised and internationally accepted consensus screening criteria. (shrink)

Developmental plasticity as the nexus between genetics and ecology.

In 1990 Robert Lickliter and Thomas Berry identified the phylogeny fallacy, an empirically untenable dichotomy between proximate and evolutionary causation, which locates proximate causes in the decoding of ‘ genetic programs’, and evolutionary causes in the historical events that shaped these programs. More recently, Lickliter and Hunter Honeycutt argued that Evolutionary Psychologists commit this fallacy, and they proposed an alternative research program for evolutionary psychology. For these authors the phylogeny fallacy is the proximate/evolutionary distinction itself, which they argue constitutes (...) a misunderstanding of development, and its role in the evolutionary process. In this article I argue that the phylogeny fallacy should be relocated to an error of reasoning that this causal framework sustains: the conflation of proximate and evolutionary explanation. Having identified this empirically neutral form of the phylogeny fallacy, I identify its mirror image, the ontogeny fallacy. Through the lens of these fallacies I attempt to solve several outstanding problems in the debate that ensued from Lickliter and Honeycutt’s provocative article. (shrink)

A formalism is introduced to represent the connective organization of an evolving neuronal network and the effects of environment on this organization by stabilization or degeneration of labile synapses associated with functioning. Learning, or the acquisition of an associative property, is related to a characteristic variability of the connective organization: the interaction of the environment with the genetic program is printed as a particular pattern of such organization through neuronal functioning. An application of the theory to the development of (...) the neuromuscular junction is proposed and the basic selective aspect of learning emphasized. (shrink)

In 1926, Haldane published an essay titled 'On Being the Right Size' in which he argued that the structure, function, and behavior of an organism are strongly conditioned by the physical forces that exert the greatest impact at the scale at which it exists. This chapter puts Haldane’s insight to work in the context of contemporary cell and molecular biology. Owing to their minuscule size, cells and molecules are subject to very different forces than macroscopic organisms. In a sense, macroscopic (...) and microscopic entities inhabit different “worlds”: the former is ruled by gravity and inertia, whereas the latter is governed by Brownian motion. One implication is that we should be extremely skeptical of models and analogies that seek to explain properties of microscopic entities by appealing to properties of macroscopic ones. Unfortunately, this is precisely what the appeal to engineering metaphors in molecular biology attempts to do. Molecular biologists routinely resort to such metaphors because they are familiar and intuitively intelligible. But if our machines were the size of molecules it would be impossible for them to function the way they do. It follows that we should avoid distorting biological reality by construing it in engineering terms. In this chapter I examine four key metaphors in molecular biology – “genetic program,” “cellular circuitry,” “molecular machine,” and “molecular motor” – and I argue that their deficiencies derive from their neglect of scale. I also try to explain why many biologists today appear to have forgotten the importance of scale that Haldane drew attention to in his essay. I suggest that the reason has to do with the influence of Schrödinger’s argument in 'What is Life?' regarding the stability of the gene. (shrink)

François Jacob viewed the living world as interconnected by reproductive links, suggesting that biology should not limit itself to studying individual organisms given their ephemeral nature. He believed that reproduction was the cause and purpose of life, asserting that the genetic program played a crucial role in physiology and evolutionary biology, offering a potential unifying framework for biology. While acknowledging the importance of Jacob’s idea of reproduction as a nexus, there are criticisms regarding his reliance on genetic programs. (...) Various approaches to understanding the causes of reproduction—including formal, material, and externally scaffolded factors—are explored and highlight some perspectives that extend beyond the concept of genetic programming. Furthermore, criticisms and objections to the organizational aspects and significance of reproduction in life are addressed. Finally, the relational nature of reproduction is presented as a crucial aspect that necessitates considering collaborative and distributed models. (shrink)

The question of the holistic structure of an organism is a recurring theme in the philosophy of biology and has been increasingly discussed again in recent years. Organisms have recently been described as complex systems that autonomously create, maintain and reproduce themselves while constantly interacting with their environment. Key focal points include their autopoiesis, autonomy, agency and teleological structure. This perspective marks a significant advancement from the 20th-century viewpoint, which predominantly saw organisms as genetically programmed, randomly generated and blindly selected (...) survival-machines. However, crucial questions about the shape and development of organisms still lack answers. Shape and development are deeply interconnected and seem to require a holistic approach. Here, I will briefly outline a phenomenological perspective which could provide a framework for seeking answers to these fundamental questions. In particular, I propose a common four-fold phenomenal structure of the developing organism and the cognising consciousness, which makes it possible to observe the agential and teleological structure of the organism "from within". This fourfold structure also describes the molecular level and thus provides a general organismic concept. It furthermore corresponds to the four Aristotelian "causes" (conditions). (shrink)

Explains the concept of the constant subconscious (CSС) as an autonomous regulatory system of existence that is not reducible to the psyche, consciousness, or brain activity, the CSC is viewed as a distributed biological architecture implemented through genetic programs, physiological processes, and feedback loops with the environment, functioning in all forms of life regardless of conscious meanings and beliefs. In this model, consciousness performs an interface function, while meaning, personality, and motivation are interpreted as tools for stabilizing the life (...) process, rather than as its foundations. (shrink)

To construct a synthetic cell we need to understand the rules that permit life. A central idea in modern biology is that in addition to the four entities making reality, matter, energy, space and time, a fifth one, information, plays a central role. As a consequence of this central importance of the management of information, the bacterial cell is organised as a Turing machine, where the machine, with its compartments defining an inside and an outside and its metabolism, reads and (...) expresses the genetic program carried by the genome. This highly abstract organisation is implemented using concrete objects and dynamics, and this is at the cost of repeated incompatibilities (frustration), which need to be sorted out by appropriate «patches». After describing the organisation of the genome into the paleome (sustaining and propagating life) and the cenome (permitting life in context), we describe some chemical hurdles that the cell as to cope with, ending with the specific case of the methionine salvage pathway. (shrink)

Life can be defined as combining two entities that rest on completely different physico-chemical properties and on a particular way of handling information. The cell, first, is a « machine », that combines elements which are quite similar (although in a fairly fuzzy way) to those involved in a man-made factory. The machine combines two processes. First, it requires explicit compartmentalisation, including scaffolding structures similar to that of the châssis of engineered machines. In addition, cells define clearly an inside, the (...) cytoplasm, and an outside. The cell envelope is more or less complicated in bacteria, and it is much more complicated in organisms made of cells with a nucleus (eukaryotes). Second, the machine also requires dynamic chemical processes, collectively named metabolism, that can be split into intermediary metabolism, managing chemical transformations and transport of small building blocks and management of energy (often with a rotating nanomachine, ATP synthase), and the macromolecule synthesis, salvage and turnover machinery which uses a variety of nanomachines, the ribosome being the most prominent one. The second entity which needs to be associated to life is the genetic program, in the form of the genome, composed of one or several chromosomes made of DNA. This is the entity which associates most clearly to information. Natural selection uses information in a particular way: it is a process that uses energy to prevent degradation of any functional entity. This process keeps building up novel information within organisms. (shrink)

This paper proposes a radical philosophical-ontological perspective on the Human Body/Organism, putting forward the Ontological-Agonistic Thesis, according to which it is not a simple passive biological aggregate or a genetically programmed machine, but an act of Fierce Agonic Ontification, a Tensional Unity snatched from nothingness through unceasing ontological/ontogenetic confrontation. The starting point of the article is the Radical Interrogation of being, which deconstructs classical visions to reveal the organism as a phenomenon of ontological rebellion in which life is defined as (...) the ensemble of functions that incessantly compete with each other and respond in solidarity to entropy/death. In this vision, the Human Biological Ontos ceases to be a static essence and becomes a resultant of the collision between Autonomous Ontoformations—structural entities (organs, systems, cellular populations) with the characteristics of a being that fiercely dispute ontic space and metabolic resources. The unity of the whole is not a pre-established harmony, but a managed state of siege, where the assault force called Promergence imposes an iron order upon raw matter, transforming factic resistance into Radiant Vitality. Ontogenesis is re-signified as an Ontification through Siege, where the human form is sculpted through Dysmergence and mutual pressure, finalizing through the Institution of a survival pact under pressure. The functioning of the organism is validated on two fronts: the Internal Axis, where the fight against Facticity and structural errors unfolds through Agonic Autophagy, and the External Axis, where the biological fortress retaliates against the Entropic Nonsense of the environment. This dynamic dictates new categorial interpretațiuni: Homeostasis becomes an Armed Peace, a collision equilibrium maintained through micro-confrontations; Temperament is defined as the individual's Biological Fighting Style; Immunity represents the Ontological Repressive Force that purges alterity; while Health is proclaimed as the Victorious Tensional Triumph of the system. Disease thus appears as a Rupture of the Internal Hierarchy of power, and Death as a Definitive Ontological Surrender to mineral inertia. In its peak state, however, the organism is integrated into the architecture of the person as a Primordial Energetic Motor, providing the necessary tension so that Consciousness—seen as the Supreme Form of Agonic Vigilance—can transform biology into an assumed destiny. The paper concludes that life is a Tensional Triumph, an epic of resistance in which order is snatched second by second from chaos, affirming the dignity of man as a pole of power that transforms structural agony into a glorious victory of being over nothingness. (shrink)

Abstract -/- Brain development is a continuous, complex process shaped by the interplay between genetic programming and environmental input. From the prenatal stage through adolescence, numerous factors—including maternal nutrition, caregiver responsiveness, and enriched stimulation—significantly influence neural growth and cognitive outcomes. This paper presents an integrative overview of critical developmental periods, key biological and psychosocial influences, and evidence-based strategies to support optimal brain maturation. Special emphasis is placed on prenatal nutrient sufficiency and adolescent prefrontal cortex development. Practical implications for (...) healthcare, parenting, and education are discussed to encourage holistic and preventive approaches to brain health. -/- . (shrink)

A major flaw of the book is its failure to note Wittgenstein’s role in destroying the mechanical or reductionist or computationalist view of mind. These continue to dominate cognitive science and philosophy in spite of the fact that they were powerfully countered by W and later by Searle and others. -/- There is much talk of W’s use of terms like “grammar”, “rules” etc but never a clear mention that they mean our Evolved Psychology or our genetically programmed innate behavior. (...) There are references to Baker and Hacker's works and to Budd, but none to many standard W refs such as ter Hark, Johnston, and especially to the searchable Intelex CDROM of his complete works, nor to Searle, and none to the vast literature of EP. -/- Many sections of the book are reasonably successful in describing W’s work but there is much aimless wandering and many mistakes and confusions. These will hopefully be obvious to those who read the above and my other reviews as I cannot recount more than a few of the hundreds of critical comments I made in my two readings of this book. A major flaw, common to most writing in the behavioral sciences, is the lack of awareness of the S1/S2 two selves mode of describing personality that W pioneered (though nobody noticed) and a failure to be clear about nature/nuture issues. The fast automatic perceptions, ‘rules’ and behaviors of S1 are mushed together with the slow conscious dispositional thinking, believing and rule following of S2 and neither are clearly or consistently distinguished from the arbitrary cultural behaviors of S3. -/- I wrote this review several years ago and since then my ideas have evolved considerably. Eventually I may revise this but for now the interested reader may consult my many more recent reviews and articles, especially “ The Logical Structure of Philosophy, Psychology, Mind and Language as Revealed in Wittgenstein and Searle” 80p (2016). Briefly, I now see that virtually all authors failed to give Wittgenstein’s last work “On Certainty” the prominent position it deserves and likewise failed to take advantage of the powerful dual systems of thought framework. Nor have they adopted the useful extensions of Wittgenstein’s work made by John Searle. So I first lay out a framework and then provide some detailed comments. -/- This is a reasonable first attempt to bring W’s pioneering work on higher order thought to the attention of psychology but it has many failings and needs a thorough rewrite. -/- Those wishing a comprehensive up to date framework for human behavior from the modern two systems view may consult my book ‘The Logical Structure of Philosophy, Psychology, Mind and Language in Ludwig Wittgenstein and John Searle’ 2nd ed (2019). Those interested in more of my writings may see ‘Talking Monkeys--Philosophy, Psychology, Science, Religion and Politics on a Doomed Planet--Articles and Reviews 2006-2019 3rd ed (2019), The Logical Structure of Human Behavior (2019), and Suicidal Utopian Delusions in the 21st Century 4th ed (2019). (shrink)

Habermas's collection of essays "The Future of Human Nature" is of particular interest for two sorts of reasons. For those interested in bioethics, it contains a genuinely new set of arguments for placing serious restrictions on using prenatal genetic technologies to “enhance” offspring. And for those interested in Habermas’s moral philosophy, it contains a number of new developments in his “discourse ethics”—not the least of which is a willingness to engage in applied ethics at all. -/- The real key (...) to Habermas’s argument is that human personhood and moral agency presuppose certain modes of relating to oneself that are threatened by the asymmetrical way in which genetic enhancements would presumably work. Thus, instead of taking up and then extending familiar normative concerns about unequal opportunities or the criteria for moral personhood, Habermas believes that the emerging technologies of genetic enhancement demand genuinely new arguments, and he proposes to focus on the effects of genetic programming on whether the agent can consider herself free and equal—effects, that is, regarding what one might call the reflexive attitudinal preconditions for moral agency. -/- Like contractarians and Kantians more generally, Habermas faces difficulties accommodating the intuition that we might have obligations toward potential persons. The difficulty is particularly pronounced in the case of Habermas’s “discourse theory of morality,” since it construes the moral point of view in terms of processes of deliberation among all those affected by the norm at issue which the participants consider in the deliberative process to be open, fair, and inclusive. Future generations do not fit neatly into this deliberative process, nor do prepersonal humans. Moral norms adjudicated in such discourse clearly affect their interests, but they cannot themselves participate in the discourse. In the past, Habermas and other “discourse ethicists” have tried to address this worry by introducing “advocatory discourses.” But this move threatens to undo a distinctive, appealing feature of Habermas’s moral theory: the pragmatist insistence on the innovative, critical, unpredictable discourse generated by actual participants in discourse and the refusal (contra Rawls, in particular) to rely on hypothetical representatives. -/- In The Future of Human Nature, Habermas ventures a different strategy,focused on expanding what he calls the “ethical” domain, which differs from the “moral” domain in being a matter of a community’s articulation of its core values and conception of the good. Previously, Habermas distinguished “ethical-existential” and “ethical-political” domains, as a matter of who an individual or a community, respectively, is and wants to be. In the present book, Habermas makes the remarkable move of introducing the category of the “species-ethical,” which is supposed to be the domain of questions raised by the human species as a whole about the question of what it is to be human. This theoretical move extends further steps Habermas had already taken in speaking of ethical solidarity within the global community. -/- . (shrink)

In this paper I piece present an account of Husserl’s approach to the phenomenological reconstruction of consciousness’ immemorial past, a problem, I suggest, that is quite pertinent for defenders of Lockean psychological continuity views of personal identity. To begin, I sketch the background of the problem facing the very project of a genetic phenomenology, within which the reconstructive analysis is situated. While the young Husserl took genetic matters to be irrelevant to the main task of phenomenology, he would (...) later come to see their importance and, indeed, centrality as the precursor and subsoil for the rationality of consciousness. I then argue that there is a close connection between reconstruction and genetic phenomenology, such that reconstruction is a necessary component of the program of genetic phenomenology, and I set out an argument of Husserl’s compelling one to enter into reconstructive territory. With that impetus, I schematically lay out the main contours one finds in Husserl’s practice of reconstructive techniques. We find him taking two distinct approaches, that of the individual viewed egologically (through the abstract lens of a single individual’s consciousness) and as embedded in interpersonal relations. Husserl occasionally calls these the approach “from within” and “from without,” respectively. Ultimately, the two approaches are not only complementary, but require one another. In closing, I argue that these considerations lead to a blurring of lines between the genetic and generative phenomenological registers, which challenges the prevalent view that there is a sharp demarcation of the two. (shrink)

The objective of this paper is to introduce, into the English scientific-philosophical literature of Genetic Epistemology, a model called the Model of the System of Schemes of Actions and Operations on Symbols and Signs (MoSSAOSS), and summarize its results, so far. MoSSAOSS articulates some of the principal theoretical and experimental results obtained by Piaget and his coworkers, in a systemic, systematic and synthetic view. Here, the term model means a schematic representation of experience, in which the relation of elements (...) can be explored by means of logic and mathematics in order to deduce properties that correspond to direct observable empirical properties, in a sufficiently accurate form. Through explicit definitions and hypotheses, MoSSAOSS intends to reveal, in an abstract and simplified form, the general structure and functioning of the System of Schemes of Actions and Operations on Symbols and Signs. This system makes explicit the necessary elements for the acquisition of knowledge by the epistemic subject (the knower subject), allowing for the explanation of its developmental stages, as well as the attribution of meaning to objects and situations, and to the subject’s actions and operations. Conceived in 1992 and introduced in Portuguese scientific-philosophical literature in 2014, MoSSAOSS has been used in a research program to study the necessary structures for knowledge acquisition, particularly scientific-philosophical knowledge. Its main results are summarized here. (shrink)

A remarkable event occurred at the December 3, 2004, meeting of the U. S. President’s Council on Bioethics. Council member William Hurlbut, a physician and Consulting Professor in the Program in Human Biology at Stanford University, formally unveiled a proposal that he claimed would solve the ethical problems surrounding the extraction of stem cells from human embryos. The proposal would involve the creation of genetically defective embryos that “never rise to the level of integrated organismal existence essential to be designated (...) human life with potential,” and therefore could be used as morally acceptable sources of stem cells for research and therapy. The aim of this essay is to show that Hurlbut’s proposal does not solve the ethical problems associated with human embryonic stem cell research. Two major reasons are presented. First, the proposal, which involves modification of a somatic cell nucleus, suffers from an ethical problem that is common to all types of human genetic engineering: since the procedure is not foolproof, there will be failures. In the case of the procedure Hurlbut proposes, some normal (albeit cloned) embryos will be produced. Second, the embryo engineered in the manner described is, at least in the early stages of its development, fully human despite its genetic defect. This essay also will show how a reasonable person might mistakenly view the proposal as legitimate if he or she makes the error of conflating genetic determinism with Aristotelian teleology. Finally, it will argue that ethical clarity can be achieved by seeing the embryo as a holistic entity possessing emergent properties that cannot simply be spelled out by genes. (shrink)

Richard Dawkins has popularized an argument that he thinks sound for showing that there is almost certainly no God. It rests on the assumptions (1) that complex and statistically improbable things are more difficult to explain than those that are not and (2) that an explanatory mechanism must show how this complexity can be built up from simpler means. But what justifies claims about the designer’s own complexity? One comes to a different understanding of order and of simplicity when one (...) considers the psychological counterpart of information. In assessing his treatment of biological organisms as either self-programmed machines or algorithms, I show how self-generated organized complexity does not fit well with our knowledge of abduction and of information theory as applied to genetics. I also review some philosophical proposals for explaining how the complexity of the world could be externally controlled if one wanted to uphold a traditional understanding of divine simplicity. (shrink)

This academic paper provides a historical reflection on the problem of the origin of science in order to determine the reasons for differences in determining the date and content of the first scientific achievements. The application of historical-genetic research methods in the disciplinary aspect contributes to the distinction of particular scientific programs in the science body frame with a different relationship between the object and subject of cognition, the internal logic of ideas and worldviews. As a result, the existing (...) research concerned with the conditions of knowledge function in different types of society or with the relations between the structure of knowledge and its purpose, was supplemented by an explication of forms of the continuity of program components – ontological, epistemological and axiological basis of specific scientific cognition/knowledge. In particular, it is established that the ancient world atomistic and peripatetic programs follow the structural pattern of the scientific explanation of the Pythagorean one (scientific and philosophical at the same time), contributing a new subject content in it. (shrink)

The rediscovery of Mendel's laws a century ago launched the science that William Bateson called "genetics," and led to a new view of evolution combining selection, particulate inheritance, and the newly characterized phenomenon of "mutation." This "mutationist" view clashed with the earlier view of Darwin, and the later "Modern Synthesis," by allowing discontinuity, and by recognizing mutation (or more properly, mutation-and-altered-development) as a source of creativity, direction, and initiative. By the mid-20th century, the opposing Modern Synthesis view was a prevailing (...) orthodoxy: under its influence, "evolution" was redefined as "shifting gene frequencies," that is, the sorting out of pre-existing variation without new mutations; and the notion that mutation-and-altered-development can exert a predictable influence on the course of evolutionary change was seen as heretical. Nevertheless, mutationist ideas re-surfaced: the notion of mutational determinants of directionality emerged in molecular evolution by 1962, followed in the 1980s by an interest among evolutionary developmental biologists in a shaping or creative role of developmental propensities of variation, and more recently, a recognition by theoretical evolutionary geneticists of the importance of discontinuity and of new mutations in adaptive dynamics. The synthetic challenge presented by these innovations is to integrate mutation-and-altered-development into a new understanding of the dual causation of evolutionary change--a broader and more predictive understanding that already can lay claim to important empirical and theoretical results--and to develop a research program appropriately emphasizing the emergence of variation as a cause of propensities of evolutionary change. (shrink)

A recent study by Castellani et al. (JAMA 302(23):2573–2579, 2009) describes the population-level effects of the choices of individuals who underwent molecular carrier screening for cystic fibrosis (CF) in Veneto, in the northeastern part of Italy, between 1993 and 2007. We discuss some of the ethical issues raised by the policies and individual choices that are the subject of this study. In particular, (1) we discuss the ethical issues raised by the acquisition of genetic information through antenatal carrier testing; (...) (2) we consider whether by choosing to procreate naturally these couples can harm the resulting child and/or other members of society, and what the moral implications of such harm would be; (3) we consider whether by choosing to avoid natural procreation carrier couples can harm current or future individuals affected by cystic fibrosis; (4) we discuss whether programs that make carrier testing available can be considered eugenic programs. (shrink)

Traditional memetics failed as a research program due to unresolved problems concerning units, transmission fidelity, explanatory mechanism, and theoretical isolation. This paper proposes a fundamental reformulation grounded in Universal Constraint Parsing (UCP) and Level-Conditional Rendering (LCR), treating memetic patterns as the basic units of adaptive information processing across all substrates and scales. -/- We argue that memetic patterns are substrate-independent, context-sensitive configurations encoding behavior and abstract content. What biologists call genes and what Dawkins called memes are both memetic patterns differing (...) in storage substrate, transmission mechanism, and context-range. Genetic encoding uses a rigid substrate (DNA) optimized for long-term storage; the patterns themselves become fluid and context-responsive once expressed. Learned patterns occupy various positions along a spectrum from deeply embedded to highly flexible. -/- Cognition is the acquisition, storage, combination, and context-adaptive deployment of memetic patterns through pattern selection dynamics. The same constraint-satisfaction logic that governs physical systems operates at the cognitive scale through domain-specific constraints. Learning is acquiring patterns and refining context-fitting. Intelligence is the capacity for functional equivalence across structural difference under active constraints. -/- Consciousness is approached not as emerging from memetic processing, but as jointly requiring both architectural structure and coherent pattern content: neither architecture alone nor patterns alone constitutes conscious experience, but together they are jointly necessary and sufficient. The stable orbit of recursive self-modeling operating on coherent content is what consciousness is. This reframing dissolves traditional problems while connecting memetics to physics, biology, and cognitive science through a unified constraint-satisfaction framework. -/- . (shrink)

Definition of problem Newborn screening (NBS) is an internationally successful program for the secondary prevention of rare congenital diseases. At present, most of the target conditions in NBS are diagnosed by biochemical markers. Recent advances in genomic sequencing and in the bioinformatic evaluation of genetic variants will soon make it feasible however to expand NBS significantly by testing newborns directly for pathogenic variants. Yet, genomic newborn screening (gNBS) raises important ethical issues that require resolution, given that several pilot studies (...) on gNBS implementation are already underway. Given a rapidly growing scholarly engagement with the ethics of gNBS, a more systematic and comprehensive mapping of the ethical issues and considerations relevant to gNBS is needed to move the debate forward at this point. - -/- Methods In this integrative review, we survey the literature with the aim of delineating a conceptual framework for the ethics of gNBS, which organizes the ongoing debate and thereby provides guidance for further research. Here in Part I, we focus primarily on an exposition of the ethical issues and questions involved in gNBS program design. - -/- Conclusion The ethical issues divide into issues regarding (1) the test itself and the selection of target conditions, (2) informed consent, and (3) genomic data generation, storage, and use. Regarding (1) we discuss several dimensions along which potential target conditions can differ and their ethical implications, and formulate some requirements on appropriate selection criteria with special regard to minimizing diagnostic and therapeutic uncertainty. Regarding (2) we discuss the need for informed consent, the structure and content of pre-test counseling (when, who, what, how), the suggestion of a tiered testing offer, and familial conflict. Regarding (3) we discuss liberal versus restrictive approaches to genomic data generation, parental consent to genomic raw data storage for further uses beyond the test, some candidate further uses, and the risk of abuse. (shrink)

The genealogy-based classificatory programs of Kant and Darwin are briefly discussed for context. It is detailed how in biology there is no unambiguous term to reference infraspecific-level descent-based divisions. The term lineage population is introduced and defined for analytic purposes as one of a set of inter-fertile divisions of organisms into which members are arranged by propinquity of descent. It is argued that the lineage population concept avoids the ambiguities associated with related biological and anthropological concepts and polysemes such as (...) population, ethnicity, and race. Other terms and concepts, such as form, cline, cluster, geographic population, breeding population, genetic population, breed, species, subspecies, ancestry, geographic ancestry, biogeographic ancestry, ancestral population, ancestry population, natural division, and population lineage, are discussed in relation to this concept. It is concluded that the lineage population concept is a useful analytic tool which describes, in line with the Kantian/Darwinian perspective, an interesting class of biological variation. (shrink)

This work presents a systematic scientific reconstruction of the Philosophy of Belonging developed by Carlos Federico Obregón Díaz, grounded in contemporary physics, evolutionary biology, neuroscience, developmental psychology, and the social sciences. The central ontological thesis—“to be is to belong”—argues that no entity exists in isolation and that all forms of existence emerge, persist, and transform within networks of constitutive relations. The study integrates relational ontology from physics (interaction-based universe), evolutionary biology (genetic variability, adaptation, mortality), and neuropsychology (attachment, mentalization, and (...) identity formation) to propose a unified interdisciplinary framework explaining human existence, identity, freedom, and well-being through belonging structures. It introduces the concepts of dual temporality (diachronic and synchronic time), the three pathways of belonging (love, social significance, and material-existential belonging), and the neurobiological architecture of belonging as foundational to survival, mental integration, and existential regulation. The work contributes to contemporary debates in ontology, philosophy of science, philosophical anthropology, psychology of belonging, and interdisciplinary philosophy by offering a scientifically grounded relational ontology applicable to ethics, social theory, and human development. This publication is part of the broader research program on the Philosophy and Economy of Belonging, which develops a relational scientific ontology where existence, adaptation, and human flourishing are understood as dynamic processes of constitutive belonging across biological, social, and symbolic domains. (shrink)

Variation, adaptation, heredity and fitness, constraints and affordances, speciation, and extinction form the building blocks of the (Neo-)Darwinian research program, and several of these have been called “Darwinian principles.” Here, we suggest that caution should be taken in calling these principles Darwinian because of the important role played by reticulate evolutionary mechanisms and processes in also bringing about these phenomena. Reticulate mechanisms and processes include symbiosis, symbiogenesis, lateral gene transfer, infective heredity mediated by genetic and organismal mobility, and hybridization. (...) Because the “Darwinian principles” are brought about by both vertical and reticulate evolutionary mechanisms and processes, they should be understood as foundational for a more pluralistic theory of evolution, one that surpasses the classic scope of the Modern and the Neo-Darwinian Synthesis. Reticulate evolution moreover demonstrates that what conventional (Neo-)Darwinian theories treat as intra-species features of evolution frequently involve reticulate interactions between organisms from very different taxonomic categories. Variation, adaptation, heredity and fitness, constraints and affordances, speciation, and extinction therefore cannot be understood as “traits” or “properties” of genes, organisms, species, or ecosystems because the phenomena are irreducible to specific units and levels of an evolutionary hierarchy. Instead, these general principles of evolution need to be understood as common goods that come about through interactions between different units and levels of evolutionary hierarchies, and they are exherent rather than inherent properties of individuals. (shrink)

Originally applied on domestic and lab animals, assisted reproduction technologies (ARTs) have also found application in conservation breeding programs, where they can make the genetic management of populations more efficient, and increase the number of individuals per generation. However, their application in wildlife conservation opens up new ethical scenarios that have not yet been fully explored. This study presents a frame for the ethical analysis of the application of ART procedures in conservation based on the Ethical Matrix (EM), and (...) discusses a specific case study—ovum pick-up (OPU) procedures performed in the current conservation efforts for the northern white rhinoceros (Ceratotherium simum cottoni)—providing a template for the assessment of ART procedures in projects involving other endangered species. (shrink)

In The Future of Human Nature, Jürgen Habermas raises the question of whether the embryonic genetic diagnosis and genetic modification threatens the foundations of the species ethics that underlies current understandings of morality. While morality, in the normative sense, is based on moral interactions enabling communicative action, justification, and reciprocal respect, the reification involved in the new technologies may preclude individuals to uphold a sense of the undisposability of human life and the inviolability of human beings that is (...) necessary for their own identity as well as for reciprocal relations. Engaging with liberal bioethics and Catholic approaches to bioethics, the article clarifies how Habermas’ position offers a radical critique of liberal autonomy while maintaining its postmetaphysical stance. The essay argues that Habermas’ approach may guide the question of rights of future generations regarding germline gene editing. But it calls for a different turn in the conversation between philosophy and theology, namely one that emphasizes the necessary attention to rights violations and injustices as a common, postmetaphysical starting point for critical theory and critical theology alike. In 2001, Jürgen Habermas published a short book on questions of biomedicine that took many by surprise.[1] To some of his students, the turn to a substantive position invoking the need to comment on a species ethics rather than outlining a public moral framework was seen as the departure from the “path of deontological virtue,”[2] and at the same time a departure from postmetaphysical reason. Habermas’ motivation to address the developments in biomedicine had certainly been sparked by the intense debate in Germany, the European Union, and internationally on human cloning, pre-implantation genetic diagnosis, embryonic stem cell research, and human enhancement. He turned to a strand of critical theory that had been pushed to the background by the younger Frankfurt School in favor of cultural theory and social critique, even though it had been an important element of its initial working programs. The relationship of instrumental reason and critical theory, examined, among others, by Max Horkheimer, Theodor W. Adorno, and Herbert Marcuse and taken up in Habermas’ own Knowledge and Interest and Theory of Communicative Action became ever-more actual with the development of the life sciences, human genome analysis, and genetic engineering of human offspring. Today, some of the fictional scenarios discussed at the end of the last century as “science fiction” have become reality: in 2018, the first “germline gene-edited” children were born in China.[3] Furthermore, the UK’s permission to create so-called “three-parent” children may create a legal and political pathway to hereditary germline interventions summarized under the name of “gene editing.”In this article, I want to explore Habermas’ “substantial” argument in the hope that philosophy and theology become allies in their struggle against an ever-more reifying lifeworld, which may create a “moral void” that would, at least from today’s perspective, be “unbearable”, and for upholding the conditions of human dignity, freedom, and justice. I will contextualize Habermas’ concerns in the broader discourse of bioethics, because only by doing this, his concerns are rescued from some misinterpretations.[1] Jürgen Habermas, The Future of Human Nature.[2] Ibid., 125, fn. 58. 8[3] Up to the present, no scientific publication of the exact procedure exists, but it is known that the scientist, Jiankui He, circumvented the existing national regulatory framework and may have misled the prospective parents about existing alternatives and the unprecedented nature of his conduct. Yuanwu Ma, Lianfeng Zhang, and Chuan Qin, "The First Genetically Gene‐Edited Babies: It's “Irresponsible and Too Early”," Animal Models and Experimental Medicine ; Matthias Braun, Meacham, Darian, "The Trust Game: Crispr for Human Germline Editing Unsettles Scientists and Society," EMBO reports 20, no. 2. (shrink)

I want to exhibit the deeper metaphysical reasons why some common ways of describing the causal role of genes in development and evolution are problematic. Specifically, I show why using the concept of information in an intentional sense in genetics is inappropriate, even given a naturalistic account of intentionality. Furthermore, I argue that descriptions that use notions such as programming, directing or orchestrating are problematic not for empirical reasons, but because they are not strictly causal. They are intentional. By (...) contrast, other notions that are part of the received view in genetics and evolutionary theory are defensible if understood correctly, in particular the idea that genes are the main replicators in evolution. The paper concludes that dropping all intentional or intentionally laden concepts does not force us to accept the so-called causal parity thesis, at least not in its stronger form. (shrink)

In this chapter, I describe my “post-diagnosis” experiences as the parent of an autistic child, those years in which I tried, but failed, to make sense of the overwhelming and often nonsensical information I received about autism. I argue that immediately after being given an autism diagnosis, parents are pressured into making what amounts to a life-long commitment to a therapy program that (they are told) will not only dramatically change their child, but their family’s financial situation and even their (...) entire mode of existence. Moreover, despite information overload, many treatment programs for autism rely on empty jargon and make completely unrealistic promises, so parents are left feeling overwhelmed and panicked. Even well respected therapy programs encourage parents to spend liberally. Indeed, autistic therapists, who help construct what I refer to as the Culture of Autism, advise parents to commit to a minimum of 35 to 45 hours of intensive therapy every week. The implications are clear: for a parent who works full-time, their autistic child becomes a second full-time job. Autism is big business right now, and therapists are pushing parents to the brink of desperation. So it is not too surprising that there is a desperate cry for a more permanent solution—which is why researchers seek to cure autism. But there are two ways to conceptualize cure. A Therapeutic Cure model (TC) conceives of a cure as a beneficial treatment for the patient that eliminates or ameliorates the harms of the disease or condition. But the notion of a therapeutic cure for autism is highly implausible, given the complexities of autism. Indeed, at this point, the vast majority of researchers have come to the conclusion that the idea of a therapeutic cure for autism is simply a non-starter. Therefore the bulk of research seeking a cure for autism focuses instead on a second approach, which I refer to as the Negative Eugenics Cure model (NEC). With this model, the intention is to eliminate the disease or condition without regard for the health or well-being of the organism carrying the disease or condition. So, with regard to autism, researchers are focusing on identifying genetic markers for autism that can be detected in utero, or in embryos, so that autistic fetuses can be eliminated and autism eradicated by preventing the existence of autistic individuals. I review both models and argue that both fail to provide convincing arguments that the “solution” either offers is desirable. Both rest on the assumption that autism renders a life not worth living which, all things considered, is false. Instead of pushing to cure autism, an idea pervasive in this Culture of Autism, I contend that autistics are individuals with lives worth living. Moreover, rather than expend millions on research to search for the means to eliminate autism, we should instead expend our resources to ensure autistic individuals have access to support they may need. If the phenomenology of autism were better understood and appreciated, the panicked demand for a cure for autism might abate and perhaps autism could be seen as having value in and of its own right. (shrink)

In both paradigm-shaping novels, the central issue is the human person: Is s/he an autonomous being, that is a “being-for-itself” (with apologies to Jean-Paul Sartre) endowed with free-will and the inherent power to organize and hence determine her/his future? Or, is s/he solely a physico-mechanical “object” whose ideas, thoughts, feelings and decisions are just by-products of her/his physico-chemical constitution, genetic configuration and environmental conditioning? From where does s/he draw the meaningfulness of her/his life? Or perhaps the more fundamental question (...) is: Is her/his life meaningful at all? Is humanity’s future predetermined by material limitations in a closed system of reality or it depends on one’s choices and decisions in a reality that is open to the unhindered operation of her/his free will? Or, given that there is human free will, could the problem lie in the condition that the majority of human beings conduct their lives like sheep in a flock whose course is stirred, regulated and determined by the strong, the tough and the powerful minority among them? Are manipulation and control an inherent dynamic to make society orderly and organized, well-coordinated, well-managed and properly governed? (shrink)

The Future of Sex in a Type III Civilization -/- The Kardashev Scale, introduced by Russian astrophysicist Nikolai Kardashev, categorizes civilizations based on their ability to harness and utilize energy. A Type III civilization—the most advanced on this scale—would control energy at the galactic level, manipulating stars, planets, and even the fundamental forces of nature. With such immense technological mastery, every aspect of human existence would be transformed, including one of the most intimate and fundamental aspects of life: sex, relationships, (...) and reproduction. -/- As humanity advances toward a Type III civilization, biological limitations will fade, and new forms of intimacy, pleasure, and reproduction will emerge. From neural interfaces and virtual reality to post-biological love and artificial reproduction, the very concept of sex will be redefined, potentially making it unrecognizable to our current understanding. -/- 1. The Evolution of Physical Intimacy -/- Physical intimacy, as it exists today, relies on the limitations of the human body. In a Type III civilization, however, individuals may no longer be restricted to a single biological form. With bioengineering, cybernetic enhancements, and direct neural stimulation, sex would become a limitless experience, far beyond what is physically possible today. -/- A. Customizable Bodies & Sensory Expansion -/- With complete mastery over genetics, nanotechnology, and synthetic biology, people could modify their bodies for any kind of intimate experience. The ability to alter sensory perception, increase pleasure thresholds, or even create entirely new erogenous zones would make sexual experiences highly personalized. Some individuals might opt for completely synthetic bodies, designed solely for pleasure, while others might explore post-human or alien-inspired forms of intimacy. -/- B. Direct Neural Interfaces & Shared Consciousness -/- Rather than relying on physical interaction, future technology may allow for direct neural linking, where partners share thoughts, emotions, and sensations in real-time. Such interfaces could create an experience where two (or more) individuals achieve a level of intimacy that transcends physical barriers—allowing them to experience each other’s consciousness as if it were their own. -/- C. Virtual & Simulated Reality -/- A Type III civilization would have full mastery over virtual worlds and simulated realities, making it possible to experience sex in ways beyond human comprehension. Entirely digital relationships could form, where individuals engage in immersive, hyper-realistic sexual encounters with AI partners, holographic beings, or uploaded consciousnesses. These experiences could be indistinguishable from physical reality or even surpass it, allowing for limitless exploration of desires. -/- 2. Love and Relationships in a Post-Biological Era -/- As humanity moves beyond its biological origins, traditional forms of love and relationships may become obsolete. Emotional connections will still exist, but their nature may change drastically. The concept of monogamy, exclusivity, and even the idea of “human” relationships may evolve into something far more fluid and expansive. -/- A. Post-Biological Love & Digital Consciousness -/- A Type III civilization may not be composed solely of biological humans. Instead, there may be uploaded consciousnesses, sentient AIs, and hybrid entities that exist purely as digital minds. Love could transcend the need for a physical body, allowing for relationships between entirely digital beings or even between human and AI minds. -/- B. Polymorphic & Multi-Dimensional Relationships -/- With extended lifespans—or even immortality—relationships might evolve beyond fixed, long-term commitments. Instead of monogamy, individuals could engage in fluid, multi-dimensional relationships, where connections change over centuries or across different realities. Romantic and sexual relationships may no longer be constrained by societal norms, but rather dictated by personal preference, emotional compatibility, and shared experiences. -/- C. Interstellar & Interspecies Relationships -/- In a galactic civilization, humanity may not be alone. Encounters with other intelligent species could lead to interstellar relationships, with entirely new forms of intimacy developing between different life forms. This could raise profound ethical and biological questions: How would reproduction work? Would consciousness itself be compatible between species? The possibilities are vast, and the definition of “love” could expand in ways we cannot yet imagine. -/- 3. The Future of Reproduction -/- Sex, as it exists today, serves both pleasure and reproduction. But in a Type III civilization, natural reproduction may become obsolete. With artificial reproduction, genetic engineering, and digital consciousness transfer, the very act of creating new life would become a technological process. -/- A. Synthetic Wombs & Designer Offspring -/- Instead of traditional pregnancy, synthetic wombs could allow for complete control over the gestation process, ensuring that offspring are free from genetic diseases and optimized for intelligence, longevity, or even specific personality traits. Parents might design their children with customized genetics, choosing features that best suit their desired outcomes. -/- B. Consciousness Cloning & AI Offspring -/- Rather than being born biologically, future individuals may come into existence via consciousness transfer or digital cloning. A person’s mind could be copied, merged, or combined with another consciousness to create a new, unique being. This would make traditional reproduction unnecessary, as entirely new forms of “birth” would emerge through digital evolution. -/- C. Asexual & Post-Reproductive Beings -/- As intelligence moves beyond biological needs, reproduction itself may become irrelevant. Post-human entities might exist without gender, physical bodies, or reproductive urges, focusing instead on intellectual, emotional, or spiritual evolution. This could lead to a society where sex and reproduction are optional experiences rather than necessities. -/- 4. Ethical & Social Implications -/- With such drastic changes, new ethical dilemmas would arise. Would AI partners have rights? Should digital beings be considered “alive”? How would consent work in simulated realities? These are just a few of the complex questions that a Type III civilization would need to address. -/- A. The Rights of Digital Beings -/- If AI or uploaded consciousnesses become sentient, should they have the same rights as biological humans? Could an AI “refuse” to engage in intimacy, or would their programmed nature create ethical concerns regarding free will? -/- B. Cultural Diversity in a Galactic Civilization -/- With multiple species, AI entities, and human-offshoots existing together, different cultures would have wildly different perspectives on sex and relationships. Navigating these differences could lead to new forms of ethics, laws, and social structures that govern interstellar intimacy. -/- Conclusion: The End of Sex as We Know It? -/- A Type III civilization would not only revolutionize technology and society but would also completely redefine sex, love, and reproduction. Physical limitations would disappear, intimacy would become a matter of personal choice, and relationships could take on entirely new forms. Whether through neural linking, virtual pleasure, designer offspring, or digital consciousness, sex in a Type III civilization might evolve into something that is unrecognizable to humans today. -/- The real question is: Would sexuality still matter in a post-biological future? Or would humanity, in its pursuit of higher intelligence and interstellar expansion, leave behind the very concept of sex altogether? -/- . (shrink)

Consciousness research has made substantial progress on what neural processes accompany experience but much less on three older and distinct questions: why is any conscious self situated in this body rather than another (the individuation problem); why is any physical process accompanied by subjective experience at all rather than occurring in the dark (the hard problem); and what physical mechanisms could plausibly sustain the molecular-scale quantum coherence that a quantum-grounded theory of consciousness would require. The Purity Gradient Theory of Consciousness (...) (PGTC) treats these questions as real and proposes specific physical answers. It proposes that consciousness arises when proto-conscious potential — present as a fundamental property of physical reality at the particle level, varying in intensity according to quantum state purity — self-organizes through quantum wave interference into a unified experiential field. The specific character of any individual conscious self is determined by three interacting axes: a purity gradient established at fertilization by the highest-coherence material present in the combining gametes and propagated through neural development by wave-interference entrainment and cellular causal chain inheritance; a genetic blueprint inherited from both biological parents that provides the architectural landscape through which the gradient operates; and environmental modulation that shapes the propagation architecture across a lifetime. This monograph consolidates six papers originally published as a series on the Wellbeing Economy Substack. Part I presents the foundational theory, developed across philosophical, physical, and empirical chapters addressed to different disciplinary audiences. Part II extends the theory in three directions: the Adaptive Integration Thesis addresses the hard problem; the survey of CISS dynamics, fermionic dark-state symmetry, and related mechanisms addresses the order-of-magnitude decoherence gap that the theory’s central physical claim must close; and the engagement with Parfit develops the implications for personal identity, continuity, and death. Part III applies the framework to two domains where principled answers matter for practical decision-making: machine consciousness, and the moral status of beings ranging from fish and insects to fetuses to patients with disorders of consciousness. PGTC is offered as a research program proposal rather than a completed scientific theory. The philosophical architecture is developed; the empirical predictions are specific and testable with existing methods and existing datasets; the physics is preliminary, with formal calculation explicitly invited as the central collaborative contribution the theory most needs. The monograph is designed to make engagement productive in either direction — refutation of specific claims would advance the program by eliminating candidates, and calculation supporting the claims would mature it from research program into physically grounded account. (shrink)

Breeders of purebred dogs usually have several goals they want to accomplish, of which canine wellbeing is one. The purpose of this article is to investigate what we ought to do given this goal. Breeders typically think that they fulfil their wellbeing-related duties by doing the best they can within their breed of choice. However, it is true of most breeders that they could produce physically and mentally healthier dogs if they switched to a healthier breed. There are a few (...) breeds that are healthier than other breeds as well as mutts; we could maximize wellbeing for the next generations by focusing all our breeding resources on those. However, in the long run such a strategy would severely deplete the canine gene pool. If we are to breed for wellbeing in the long run, we must thus weigh the benefits of selection against physical and mental problems against the benefits of genetic diversity. The optimal breeding strategy for canine wellbeing is to preserve many breeds, though not all of them. Furthermore, we ought to combine strict health programs with looser barriers between breeds. Such a policy conflicts with the goal of breed preservation, at least if we think of breeds as populations registered within kennel clubs rather than types of dogs, but not with the goal of producing good working dogs capable of performing various tasks. (shrink)

Starting from the observation of the binary character YES/NOT of our decisions in relation to the information received from the environment, determining both our life and specie evolution by adaptation, it is defined the info-creational field and thought as an information operator on this field, allowing to describe the individual EGO as a receiver and producer information system, based on an operational and a programmed informational subsystem. Consciousness appears thus be an integrated information system which allows the adaptation to the (...) environment and survival of specie, supported by informed matter (physical body) to maintain functionality of the whole. On this basis, there were identified two main informational circuits of the human body controlled by the consciousness: (i) the attitude as a short-time reaction circuit allowing the immediate adaptation to the environment; (ii) the informational genetic transmission as a large-time process assuring both the evolution by the transference of the new adaptation characteristics to the next generations and the survival of the specie. Observing the anti-entropic nature of the information activity mobilized to support the living structure, there were identified the anti-entropic, antigravitational and reverse temporal arrow features that the thought could access under special focusing conditions, similar to those of antimatter, explaining the paranormal capacities like premonition, psychotherapy, telekinesis and levitation, particularly the cloud dissipation, induced/supported by the mind power. (shrink)

The INBIOSA project brings together a group of experts across many disciplines who believe that science requires a revolutionary transformative step in order to address many of the vexing challenges presented by the world. It is INBIOSA’s purpose to enable the focused collaboration of an interdisciplinary community of original thinkers. This paper sets out the case for support for this effort. The focus of the transformative research program proposal is biology-centric. We admit that biology to date has been more fact-oriented (...) and less theoretical than physics. However, the key leverageable idea is that careful extension of the science of living systems can be more effectively applied to some of our most vexing modern problems than the prevailing scheme, derived from abstractions in physics. While these have some universal application and demonstrate computational advantages, they are not theoretically mandated for the living. A new set of mathematical abstractions derived from biology can now be similarly extended. This is made possible by leveraging new formal tools to understand abstraction and enable computability. [The latter has a much expanded meaning in our context from the one known and used in computer science and biology today, that is "by rote algorithmic means", since it is not known if a living system is computable in this sense (Mossio et al., 2009).] Two major challenges constitute the effort. The first challenge is to design an original general system of abstractions within the biological domain. The initial issue is descriptive leading to the explanatory. There has not yet been a serious formal examination of the abstractions of the biological domain. What is used today is an amalgam; much is inherited from physics (via the bridging abstractions of chemistry) and there are many new abstractions from advances in mathematics (incentivized by the need for more capable computational analyses). Interspersed are abstractions, concepts and underlying assumptions “native” to biology and distinct from the mechanical language of physics and computation as we know them. A pressing agenda should be to single out the most concrete and at the same time the most fundamental process-units in biology and to recruit them into the descriptive domain. Therefore, the first challenge is to build a coherent formal system of abstractions and operations that is truly native to living systems. Nothing will be thrown away, but many common methods will be philosophically recast, just as in physics relativity subsumed and reinterpreted Newtonian mechanics. -/- This step is required because we need a comprehensible, formal system to apply in many domains. Emphasis should be placed on the distinction between multi-perspective analysis and synthesis and on what could be the basic terms or tools needed. The second challenge is relatively simple: the actual application of this set of biology-centric ways and means to cross-disciplinary problems. In its early stages, this will seem to be a “new science”. This White Paper sets out the case of continuing support of Information and Communication Technology (ICT) for transformative research in biology and information processing centered on paradigm changes in the epistemological, ontological, mathematical and computational bases of the science of living systems. Today, curiously, living systems cannot be said to be anything more than dissipative structures organized internally by genetic information. There is not anything substantially different from abiotic systems other than the empirical nature of their robustness. We believe that there are other new and unique properties and patterns comprehensible at this bio-logical level. The report lays out a fundamental set of approaches to articulate these properties and patterns, and is composed as follows. -/- Sections 1 through 4 (preamble, introduction, motivation and major biomathematical problems) are incipient. Section 5 describes the issues affecting Integral Biomathics and Section 6 -- the aspects of the Grand Challenge we face with this project. Section 7 contemplates the effort to formalize a General Theory of Living Systems (GTLS) from what we have today. The goal is to have a formal system, equivalent to that which exists in the physics community. Here we define how to perceive the role of time in biology. Section 8 describes the initial efforts to apply this general theory of living systems in many domains, with special emphasis on crossdisciplinary problems and multiple domains spanning both “hard” and “soft” sciences. The expected result is a coherent collection of integrated mathematical techniques. Section 9 discusses the first two test cases, project proposals, of our approach. They are designed to demonstrate the ability of our approach to address “wicked problems” which span across physics, chemistry, biology, societies and societal dynamics. The solutions require integrated measurable results at multiple levels known as “grand challenges” to existing methods. Finally, Section 10 adheres to an appeal for action, advocating the necessity for further long-term support of the INBIOSA program. -/- The report is concluded with preliminary non-exclusive list of challenging research themes to address, as well as required administrative actions. The efforts described in the ten sections of this White Paper will proceed concurrently. Collectively, they describe a program that can be managed and measured as it progresses. (shrink)

Schizophrenia is a mental disorder with high rates of prevalence in the United States and elsewhere (Jablensky 1999). It is listed as the ninth leading cause of disability worldwide (Thaker and Carpenter 2001). Yet, precisely what schizophrenia is, how its etiology unfolds, and which treatments are most effective in treating it remain largely controversial. It is diagnosed primarily according to the criteria provided by the Diagnostic and Statistical Manual of Mental Disorders (DSM). However, these particular criteria have been the target (...) of a number of criticisms, resulting in a Kuhnian crisis in the DSM-led schizophrenia research. There are a number of anomalous research findings inconsistent with the dominant DSM paradigm. Consider a few. First, DSM’s phenomenology-oriented critics suggest that the symptoms and signs listed in the DSM’s schizophrenia category do not match the clinical realities of the patients (e.g., Parnas 2000; Parnas and Handest 2003). There are also environmental, cultural, and gender-related variations in the expression of the symptoms (American Psychiatric Association 2013, 103). Second, there are concerns about the DSM’s reliability; there is no uniformity between the DSM and the International Classification of Diseases (ICD) with respect to schizophrenia diagnostic criteria (Jansson et al. 2002). In fact, based on such findings, some philosophers and psychologists including Richard P. Bentall (1993; see also this volume), Mary Boyle (1990), and Jeffrey Poland (2007) have argued against considering schizophrenia as a discrete illness. For instance, Bentall challenges the view that what are considered the symptoms of this condition fall neatly under the label “schizophrenia,” and that hallucinations and delusions associated with the condition are meaningless. In this regard, the concept of “schizophrenia” is similar to a number of other concepts; for example, “phlogiston” and “the luminiferous ether” were widely employed by scientists for a time but turned out to be scientifically misleading (Bentall 1993, 227). These concerns are mirrored also in the psychiatric community, especially in the United Kingdom and continental Europe, where there is an international debate on what to replace the concept of schizophrenia with. Third, there are cultural variations in recovery rates; for example, third-world countries have higher recovery rates than first-world countries (Warner 2009). Finally, there is skepticism raised by the National Institute of Mental Health (NIMH) about the DSM-led research program’s efficacy in encouraging research into the genetic and neural etiology of mental disorders; these concerns are applicable to schizophrenia (Insel 2013). It remains to be seen how schizophrenia will be targeted by the NIMH’s Research Domain Criteria project—the proposed research alternative to the DSM-5. Psychiatric research on schizophrenia is currently undergoing a period of extraordinary science, to apply Kuhn’s terminology to the current situation in psychiatry, with many alternative research programs investigating the illness using different assumptions and methodologies. As the struggles the DSM-led research faces are now “more generally recognized as such by the profession,” trust in the dominant DSM-led research paradigm is shaken, and “numerous partial solutions to the problem” are made available (Kuhn 1962, 82–83). I use philosophical tools in this chapter to evaluate one of these alternative research approaches that I call “phenomenology– neuroscience partnership” (PNP). First, in the “Phenomenological Approach to Schizophrenia” section, I lay out the phenomenological approach to schizophrenia that is critical of the DSM-led research. Next, in the “Phenomenology–Neuroscience Partnership in Schizophrenia Research” section, I focus on the PNP that takes this phenomenological approach as a starting point to investigate schizophrenia, and I address its shortcomings. Then, in the “Adjudication of Phenomenology–Neuroscience Partnership Paradigm” section, I conclude by pointing out the strengths of the PNP and offer prescriptions for its improvement. (shrink)