Biological Databases

Latest research

1. HighDB: a structure-annotated cyclic peptide database for comparative analysis, template retrieval, and design-oriented applications

   • Yiqi Xu
   • Ning Zhu
   • Hongliang Duan

   in Journal of Computer-Aided Molecular Design

   Article 14 July 2026

   

2. VitaGraph: building a knowledge graph for biologically relevant learning tasks

   • Francesco Madeddu
   • Lucia Testa
   • Sergio Barbarossa

   in Scientific Data

   Article Open access 14 July 2026

   

3. A bovine in vitro platform improves species comparability of mitochondrial apoptosis drug-response readouts

   • Frederike Werry
   • Axel Schöniger
   • Frank Edlich

   in Archives of Toxicology

   Article Open access 14 July 2026

   

4. The global constraint catalogue: a retrospective on organic growth and unplanned emergence

   • Nicolas Beldiceanu
   • Sophie Demassey
   • Thierry Petit

   in Constraints

   Article 11 July 2026

5. SigMine and OPathDb: a literature-mining pipeline and database of potential opportunistic pathogens

   • Urvija Rani
   • Akshath Nair
   • Sonika Bhatnagar

   in Archives of Microbiology

   Article 11 July 2026

   

6. Four questions for AI-ready biological data

   • Amarda Shehu
   • Ruth Nussinov

   in Nature Machine Intelligence

   Article 10 July 2026

7. The 52^nd Annual Meeting of the European Society for Blood and Marrow Transplantation: Data Management Group – Poster Session (P973–P983)

   in Bone Marrow Transplantation

   Article 10 July 2026

   

8. Think preprints are unreliable? Analysis of 70,000 studies might change your mind

   • Mohana Basu

   in Nature

   Article 10 July 2026

   

9. Click to plot

   • Helena Klara Jambor
   • Alexander Lex

   in Nature Methods

   Article 09 July 2026

   

10. Representation in research

    in Nature Methods

    Article 09 July 2026

11. SpatioTemporal Omics Consortium: a global effort for biological discovery across species, space and time

    • Lipin Loo
    • Keke Xia
    • Quan Nguyen

    in Nature Methods

    Article 09 July 2026

    

12. Frontier AI companies as biotech acquirers

    • Amelia Palermo

    in Nature Biotechnology

    Article 07 July 2026

13. Datasets for recommender systems: A survey and comparative overview

    • Nikolaos Polatidis
    • Almas Baimagambetov
    • Yannis Manolopoulos

    in Journal of Intelligent Information Systems

    Article Open access 07 July 2026

    

14. Comparing reference databases for pathogen detection from inter-simple sequence repeat based sequencing of tomato seeds using Kraken2

    • Wasin Poncheewin
    • Pumipat Tongyoo
    • Jutatape Watcharachaiyakup

    in Tropical Plant Pathology

    Article 07 July 2026

    

15. Malacological collections as educational resources for interactive visual learning and biodiversity exploration

    • Heliana Custodio
    • Julieta Motta
    • Gustavo Darrigran

    in Discover Ecology

    Article Open access 07 July 2026

    

16. From manual entry to machine precision: challenges and evolution of metadata schema development in collaborative research centers

    • Felix Engel
    • Claudia Giuliani
    • Klaus Kaier

    in BMC Research Notes

    Article Open access 06 July 2026

    

17. Quantum computing in transition

    in Nature Biotechnology

    Article 06 July 2026

18. Context aware knowledge discovery for clinical support using transfer learning

    • Gaurav Paliwal
    • Aaquil Bunglowala

    in Multimedia Tools and Applications

    Article 06 July 2026

    

19. Enhancing the 12S rRNA reference library of South African chondrichthyans to aid in eDNA metabarcoding

    • Kristina Loosen
    • Sara Andreotti
    • Conrad A. Matthee

    in BMC Zoology

    Article Open access 04 July 2026

    

20. Patient-derived resources for decoding and targeting brain metastases ecosystems

    • Manuel Valiente
    • Lal Era Aydoğan
    • Hind Medyouf

    in EMBO Molecular Medicine

    Article Open access 03 July 2026

    

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