{"id":"https://openalex.org/W4319659022","doi":"https://doi.org/10.1007/s10489-022-04390-7","title":"De-MISTED: Image-based classification of erroneous multiple sequence alignments using convolutional neural networks","display_name":"De-MISTED: Image-based classification of erroneous multiple sequence alignments using convolutional neural networks","publication_year":2023,"publication_date":"2023-02-09","ids":{"openalex":"https://openalex.org/W4319659022","doi":"https://doi.org/10.1007/s10489-022-04390-7"},"language":"en","primary_location":{"id":"doi:10.1007/s10489-022-04390-7","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10489-022-04390-7","pdf_url":null,"source":{"id":"https://openalex.org/S74726891","display_name":"Applied Intelligence","issn_l":"0924-669X","issn":["0924-669X","1573-7497"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Applied Intelligence","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://cnrs.hal.science/hal-04253859/document","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5090936908","display_name":"Hiba Khodji","orcid":"https://orcid.org/0000-0002-5525-4863"},"institutions":[{"id":"https://openalex.org/I4210100283","display_name":"Laboratoire des Sciences de l'Ing\u00e9nieur, de l'Informatique et de l'Imagerie","ror":"https://ror.org/00k4e5n71","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I2801509770","https://openalex.org/I4210095849","https://openalex.org/I4210100283","https://openalex.org/I4210159245","https://openalex.org/I68947357"]},{"id":"https://openalex.org/I68947357","display_name":"Universit\u00e9 de Strasbourg","ror":"https://ror.org/00pg6eq24","country_code":"FR","type":"education","lineage":["https://openalex.org/I68947357"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Hiba Khodji","raw_affiliation_strings":["University of Strasbourg, ICube Laboratory UMR7357, 1 Rue Eug\u00e8ne Boeckel, 67000, Strasbourg, France","Laboratoire des sciences de l'ing\u00e9nieur, de l'informatique et de l'imagerie"],"raw_orcid":"https://orcid.org/0000-0002-5525-4863","affiliations":[{"raw_affiliation_string":"University of Strasbourg, ICube Laboratory UMR7357, 1 Rue Eug\u00e8ne Boeckel, 67000, Strasbourg, France","institution_ids":["https://openalex.org/I68947357"]},{"raw_affiliation_string":"Laboratoire des sciences de l'ing\u00e9nieur, de l'informatique et de l'imagerie","institution_ids":["https://openalex.org/I4210100283"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076376874","display_name":"Pierre Collet","orcid":"https://orcid.org/0000-0002-5284-4702"},"institutions":[{"id":"https://openalex.org/I4210100283","display_name":"Laboratoire des Sciences de l'Ing\u00e9nieur, de l'Informatique et de l'Imagerie","ror":"https://ror.org/00k4e5n71","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I2801509770","https://openalex.org/I4210095849","https://openalex.org/I4210100283","https://openalex.org/I4210159245","https://openalex.org/I68947357"]},{"id":"https://openalex.org/I68947357","display_name":"Universit\u00e9 de Strasbourg","ror":"https://ror.org/00pg6eq24","country_code":"FR","type":"education","lineage":["https://openalex.org/I68947357"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Pierre Collet","raw_affiliation_strings":["University of Strasbourg, ICube Laboratory UMR7357, 1 Rue Eug\u00e8ne Boeckel, 67000, Strasbourg, France","Laboratoire des sciences de l'ing\u00e9nieur, de l'informatique et de l'imagerie"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Strasbourg, ICube Laboratory UMR7357, 1 Rue Eug\u00e8ne Boeckel, 67000, Strasbourg, France","institution_ids":["https://openalex.org/I68947357"]},{"raw_affiliation_string":"Laboratoire des sciences de l'ing\u00e9nieur, de l'informatique et de l'imagerie","institution_ids":["https://openalex.org/I4210100283"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039921905","display_name":"Julie Thompson","orcid":"https://orcid.org/0000-0003-4893-3478"},"institutions":[{"id":"https://openalex.org/I4210100283","display_name":"Laboratoire des Sciences de l'Ing\u00e9nieur, de l'Informatique et de l'Imagerie","ror":"https://ror.org/00k4e5n71","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I2801509770","https://openalex.org/I4210095849","https://openalex.org/I4210100283","https://openalex.org/I4210159245","https://openalex.org/I68947357"]},{"id":"https://openalex.org/I68947357","display_name":"Universit\u00e9 de Strasbourg","ror":"https://ror.org/00pg6eq24","country_code":"FR","type":"education","lineage":["https://openalex.org/I68947357"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Julie D. Thompson","raw_affiliation_strings":["University of Strasbourg, ICube Laboratory UMR7357, 1 Rue Eug\u00e8ne Boeckel, 67000, Strasbourg, France","Laboratoire des sciences de l'ing\u00e9nieur, de l'informatique et de l'imagerie"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Strasbourg, ICube Laboratory UMR7357, 1 Rue Eug\u00e8ne Boeckel, 67000, Strasbourg, France","institution_ids":["https://openalex.org/I68947357"]},{"raw_affiliation_string":"Laboratoire des sciences de l'ing\u00e9nieur, de l'informatique et de l'imagerie","institution_ids":["https://openalex.org/I4210100283"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5057426644","display_name":"Anne Jeannin\u2010Girardon","orcid":"https://orcid.org/0000-0003-4691-904X"},"institutions":[{"id":"https://openalex.org/I4210100283","display_name":"Laboratoire des Sciences de l'Ing\u00e9nieur, de l'Informatique et de l'Imagerie","ror":"https://ror.org/00k4e5n71","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I2801509770","https://openalex.org/I4210095849","https://openalex.org/I4210100283","https://openalex.org/I4210159245","https://openalex.org/I68947357"]},{"id":"https://openalex.org/I68947357","display_name":"Universit\u00e9 de Strasbourg","ror":"https://ror.org/00pg6eq24","country_code":"FR","type":"education","lineage":["https://openalex.org/I68947357"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Anne Jeannin-Girardon","raw_affiliation_strings":["University of Strasbourg, ICube Laboratory UMR7357, 1 Rue Eug\u00e8ne Boeckel, 67000, Strasbourg, France","Laboratoire des sciences de l'ing\u00e9nieur, de l'informatique et de l'imagerie"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Strasbourg, ICube Laboratory UMR7357, 1 Rue Eug\u00e8ne Boeckel, 67000, Strasbourg, France","institution_ids":["https://openalex.org/I68947357"]},{"raw_affiliation_string":"Laboratoire des sciences de l'ing\u00e9nieur, de l'informatique et de l'imagerie","institution_ids":["https://openalex.org/I4210100283"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5090936908"],"corresponding_institution_ids":["https://openalex.org/I4210100283","https://openalex.org/I68947357"],"apc_list":{"value":2390,"currency":"EUR","value_usd":2990},"apc_paid":null,"fwci":0.5382,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.6683498,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":96},"biblio":{"volume":"53","issue":"15","first_page":"18806","last_page":"18820"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.7047139406204224},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6577016115188599},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5826900005340576},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5376158356666565},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.46559345722198486},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4485355019569397},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.42521828413009644},{"id":"https://openalex.org/keywords/coding","display_name":"Coding (social sciences)","score":0.41907739639282227},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.362072229385376},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.34937554597854614},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3364138603210449},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.18567568063735962},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.18177923560142517},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1511174440383911},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.08128279447555542}],"concepts":[{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.7047139406204224},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6577016115188599},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5826900005340576},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5376158356666565},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.46559345722198486},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4485355019569397},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.42521828413009644},{"id":"https://openalex.org/C179518139","wikidata":"https://www.wikidata.org/wiki/Q5140297","display_name":"Coding (social sciences)","level":2,"score":0.41907739639282227},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.362072229385376},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.34937554597854614},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3364138603210449},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.18567568063735962},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.18177923560142517},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1511174440383911},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.08128279447555542},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1007/s10489-022-04390-7","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10489-022-04390-7","pdf_url":null,"source":{"id":"https://openalex.org/S74726891","display_name":"Applied Intelligence","issn_l":"0924-669X","issn":["0924-669X","1573-7497"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Applied Intelligence","raw_type":"journal-article"},{"id":"pmh:oai:HAL:hal-03987111v1","is_oa":true,"landing_page_url":"https://hal.science/hal-03987111","pdf_url":"https://cnrs.hal.science/hal-04253859/document","source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN: 0924-669X","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:HAL:hal-04253859v1","is_oa":true,"landing_page_url":"https://cnrs.hal.science/hal-04253859","pdf_url":"https://cnrs.hal.science/hal-04253859v1/document","source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Applied Intelligence, 2023, 53 (15), pp.18806-18820. ⟨10.1007/s10489-022-04390-7⟩","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:univoak.eu:islandora_159422","is_oa":false,"landing_page_url":"https://univoak.eu/islandora/object/islandora%3A159422","pdf_url":null,"source":{"id":"https://openalex.org/S4306402449","display_name":"univOAK (4 institutions : Universit\u00e9 de Strasbourg, Universit\u00e9 de Haute Alsace, INSA Strasbourg, Biblioth\u00e8que Nationale et Universitaire de Strasbourg)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210100283","host_organization_name":"Laboratoire des Sciences de l'Ing\u00e9nieur, de l'Informatique et de l'Imagerie","host_organization_lineage":["https://openalex.org/I4210100283"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:univoak.eu:islandora_168297","is_oa":false,"landing_page_url":"https://univoak.eu/islandora/object/islandora%3A168297","pdf_url":null,"source":{"id":"https://openalex.org/S4306402449","display_name":"univOAK (4 institutions : Universit\u00e9 de Strasbourg, Universit\u00e9 de Haute Alsace, INSA Strasbourg, Biblioth\u00e8que Nationale et Universitaire de Strasbourg)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210100283","host_organization_name":"Laboratoire des Sciences de l'Ing\u00e9nieur, de l'Informatique et de l'Imagerie","host_organization_lineage":["https://openalex.org/I4210100283"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"pmh:oai:HAL:hal-03987111v1","is_oa":true,"landing_page_url":"https://hal.science/hal-03987111","pdf_url":"https://cnrs.hal.science/hal-04253859/document","source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN: 0924-669X","raw_type":"info:eu-repo/semantics/article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2042665654","display_name":null,"funder_award_id":"ANR ArtIC ANR-20-THIA-0006","funder_id":"https://openalex.org/F4320322892","funder_display_name":"Centre National de la Recherche Scientifique"},{"id":"https://openalex.org/G6068764742","display_name":"Institut fran\u00e7ais de bioinformatique","funder_award_id":"ANR-11-INBS-0013","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G7518490959","display_name":"Artificial Intelligence for Care","funder_award_id":"ANR-20-THIA-0006","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"}],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"},{"id":"https://openalex.org/F4320322147","display_name":"Universit\u00e9 de Strasbourg","ror":"https://ror.org/00pg6eq24"},{"id":"https://openalex.org/F4320322892","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4319659022.pdf"},"referenced_works_count":47,"referenced_works":["https://openalex.org/W1842186545","https://openalex.org/W1909913737","https://openalex.org/W1932434485","https://openalex.org/W1936788844","https://openalex.org/W1994025789","https://openalex.org/W2030607567","https://openalex.org/W2030750720","https://openalex.org/W2033339460","https://openalex.org/W2035848615","https://openalex.org/W2092672051","https://openalex.org/W2094713937","https://openalex.org/W2097117768","https://openalex.org/W2105006906","https://openalex.org/W2106882534","https://openalex.org/W2107691364","https://openalex.org/W2117539524","https://openalex.org/W2125548284","https://openalex.org/W2126771369","https://openalex.org/W2127774996","https://openalex.org/W2129620046","https://openalex.org/W2136126520","https://openalex.org/W2137015675","https://openalex.org/W2144362290","https://openalex.org/W2147526198","https://openalex.org/W2152207030","https://openalex.org/W2160378127","https://openalex.org/W2163860567","https://openalex.org/W2173732482","https://openalex.org/W2183341477","https://openalex.org/W2194775991","https://openalex.org/W2258865027","https://openalex.org/W2311051041","https://openalex.org/W2463304596","https://openalex.org/W2558724937","https://openalex.org/W2618530766","https://openalex.org/W2763886723","https://openalex.org/W2807799566","https://openalex.org/W2808191239","https://openalex.org/W2906852436","https://openalex.org/W2946145748","https://openalex.org/W2987090428","https://openalex.org/W3015796860","https://openalex.org/W3035253074","https://openalex.org/W3100102095","https://openalex.org/W3113065106","https://openalex.org/W3136918052","https://openalex.org/W4230640326"],"related_works":["https://openalex.org/W2361861616","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W2218034408","https://openalex.org/W2392921965","https://openalex.org/W2358755282","https://openalex.org/W2625833328","https://openalex.org/W1533177136","https://openalex.org/W4380994516","https://openalex.org/W2556260348"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2}],"updated_date":"2026-01-25T23:04:38.658462","created_date":"2025-10-10T00:00:00"}