rename 's/(PMC|\.pdf)//g' *pdf.txt
Demo :
$ ls *txt
PMC21375.pdf.txt
$ rename -n 's/(PMC|\.pdf)//g' *txt
PMC21375.pdf.txt -> 21375.txt
from the shell prompt. It's very useful, you can put some perl code like I does in a substitution.
You can remove the -n (dry-run mode switch) when your tests become valids.
warning http://pix.toile-libre.org/upload/original/1377510865.png
There are other tools with the same name which may or may not be able to do this, so be careful.
If you run the following command (linux)
$ file $(readlink -f $(type -p rename))
and you have a result like
.../rename: Perl script, ASCII text executable
then this seems to be the right tool =)
If not, to make it the default (usually already the case) on Debian and derivative like Ubuntu :
$ sudo update-alternatives --set rename /path/to/rename
(replace /path/to/rename to the path of your perl's rename command.
Last but not least, this tool was originally written by Larry Wall, the Perl's dad.