The solution I use for this situation is screen. Start screen and create a window for each directory with C-a c and navigate there. Change between windows/directories with C-a n or C-a p. Name the windows with C-a A. Then you can pop of a list of your windows with C-a " and navigate using the window number or name. Since it is screen, you can detach from the session saving your work space and re-attach later with the same set up.

The solution I use for this situation is screen. Start screen and create a window for each directory with C-a c and navigate there. Change between windows/directories with C-a n or C-a p. Name the windows with C-a A. Then you can pop up a list of your windows with C-a " and navigate using the window number or name. Since it is screen, you can detach from the session saving your work space and re-attach later with the same set up.