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  • Well it seems that adding double quotes in the awk command somehow solves the problem but I'm quite confused how my script managed to work before. I've testing it on real data and it worked.. Commented Sep 17, 2018 at 10:07
  • Frankly I'm quite confused. Nano and shellcheck.net don't seem to highlight things in the same ways. Commented Sep 17, 2018 at 10:11
  • If you managed to solve the problem, remember to please post an answer and later accept it. Commented Sep 17, 2018 at 10:22
  • Just update the question with my 'real' script and more explanations. I am still cofnused by this syntax highlighting conflict between nano and shellcheck.net Commented Sep 17, 2018 at 10:50