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  • I have no clue at all but I tried your and all other provided scripts on different computers but my output still looks like: <br/> 1 <br/> GACGGAGGATGCAAGTGTTATCCGGAATCACTGGGCGTAAAGTTTTTTTTT <br/> 2 <br/> GACGGAGGATGCAAGTGTTATCCGGAAT <br/> 3 <br/> 4 <br/> GACGGAGGATGCAAGTGTTATCCGGAATCACTGGGCCGTCCGTAG <br/>????????? Commented Mar 14, 2018 at 8:54
  • @MSt Maybe because of <br> tag? They don't present in your sample files in the question, so you and we use different input for testing. Try to remove all tags before checking. The contents of the files should be exactly the same as in the question, then the proposed solutions should work correctly. Commented Mar 14, 2018 at 16:18