I implemented the following procedure that aims to write some files and print a message in the end of each file when the writing is done:
# Print one file per piaf
output_dir_piafs <- "OUTPUT_dataset_piafs"
unlink(output_dir_piafs, recursive = TRUE, force = TRUE)
dir.create(output_dir_piafs)
for (i in 1:length(lst_sorted)) {
sink() # Generates warnings...
filename <- paste(output_dir_piafs, "/piaf_", i, ".txt", sep="")
sink(file = filename, append = TRUE)
sink(type = "message")
cat(" ", colnames(file1), "\n")
for (j in 1:length(lst_sorted[[i]])) {
cat(j, " ")
lapply( lst_sorted[[i]][[j]],
function(x) {
cat(as.character(x), " ")
}
)
cat("\n")
}
## back to the console
sink()
cat(paste(filename, "done !\n"))
#flush(stdout()) # Tested, no particular effect
}
My problem is that, if I do not add a sink() at the very beginning of the loop, the final writing on the standard output (cat(paste(filename, "done !\n"))) has no effect. On the other hand, adding this early sink() generates warnings that I would like to avoid:
There were 50 or more warnings (use warnings() to see the first 50)
> warnings()
Warning messages:
1: In sink() : no sink to remove
2: In sink() : no sink to remove
3: In sink() : no sink to remove
Does anyone has an idea on how sink() behaves, and/or how to get rid of those warnings?
Note: I also tried try(sink(), silent=TRUE), but the silent option prevents only from errors...