| 2020-09-16 |
Mauricio Herrera... | Updating Mauricio's emailmaster61/head |
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| 2019-02-08 |
Chris Fields | Merge pull request #54 from dmr3/masterrelease-1-7-3 |
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| 2019-02-08 |
Chris Fields | Bio::Cluster is a dependency |
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| 2019-02-08 |
Chris Fields | no dist.ini yet |
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| 2019-02-08 |
Carnë Draug | Bio::Installer: remove all this modules and related... |
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| 2019-02-08 |
Carnë Draug | t/data: remove unused sample_dataset_1.* data files |
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| 2019-02-08 |
Carnë Draug | Bio/Tools/Run/Bowtie.pm: move to its own distribution |
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| 2019-02-08 |
Carnë Draug | Bio/Tools/Run/Maq.pm: move to its own distribution |
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| 2019-02-08 |
Carnë Draug | Bio/Tools/Run/TigrAssembler.pm: move to its own distrib... |
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| 2019-02-08 |
Carnë Draug | Bio/Tools/Run/Newbler.pm: move to its own distribution |
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| 2019-02-08 |
Carnë Draug | Bio/Tools/Run/Minimo.pm: move to its own distribution |
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| 2019-02-08 |
Carnë Draug | Bio/Tools/Run/Phrap.pm: move to its own distribution |
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| 2019-02-08 |
Carnë Draug | Bio/Tools/Run/Cap3.pm: move to its own distribution |
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| 2019-02-08 |
Carnë Draug | Bio/Tools/Run/BWA.pm: move to its own distribution |
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| 2019-02-08 |
Carnë Draug | Bio/Tools/Run/Meme.pm: move to its own distribution |
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| 2019-02-05 |
Carnë Draug | maint: make Changes for last release easier to parse |
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| 2019-02-05 |
Carnë Draug | maint: remove mention of non-existent Bio::Run from... |
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| 2018-09-17 |
Carnë Draug | lib/Bio/Tools/Run/Phylo/PhyloBase.pm: move to the BioPe... |
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| 2018-09-17 |
Carnë Draug | Bio/Tools/Run/Phylo/Gumby.pm: move to its own distribution |
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| 2018-09-13 |
Carnë Draug | Move base and interface classes to BioPerl distribution. |
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| 2018-09-11 |
Carnë Draug | lib/Bio/Tools/Run/AssemblerBase.pm: move to new Bio... |
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| 2018-09-08 |
Carnë Draug | scripts/bp_blast2tree.pl: new script imported from... |
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| 2018-08-23 |
Carnë Draug | Build.PL: don't use -w flag when we already use warning... |
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| 2018-08-23 |
Carnë Draug | scripts/*: use warnings pragma instead of -w flag |
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| 2017-12-08 |
Demian Riccardi | adjust version regex with optional space54/head |
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| 2017-09-16 |
Chris Fields | RT #122733: profile has to be renamed to run_profile... |
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| 2017-09-16 |
Chris Fields | RT #94872: fix parameters (underscore should be dash) |
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| 2017-09-16 |
Chris Fields | more ancient artifacts |
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| 2017-09-16 |
Chris Fields | skip some failing tests due to changes in Bowtie API... |
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| 2017-09-16 |
Chris Fields | RT #123058, skip if IPC::Run isn't installed |
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| 2017-09-16 |
Chris Fields | remove ancient artifact |
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| 2017-09-15 |
Chris Fields | skip if ClustalW wrapper isn't presentrelease-1-7-2 |
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| 2017-09-14 |
Carnë Draug | Remove Clustalw and TCoffee from list of dependencies |
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| 2017-09-14 |
Carnë Draug | Remove Clustalw and TCoffee which were moved to separat... |
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| 2017-09-11 |
Chris Fields | update Changes doc |
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| 2017-09-11 |
Chris Fields | fit SABlast skip number |
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| 2017-09-11 |
Chris Fields | add Bio::FeatureIO as a recommended dist |
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| 2017-09-11 |
Chris Fields | skip if no Bio::FeatureIO |
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| 2017-09-11 |
Chris Fields | fix Phastcons and Match, has a req for Bio::FeatureIO |
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| 2017-09-11 |
Chris Fields | fix pass-thru test count (off by one) |
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| 2017-09-11 |
Chris Fields | bump run version |
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| 2017-09-07 |
Carnë Draug | Removal of Bio::Tools::Run::Phylo::PAML::* modules... |
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| 2017-03-29 |
Brian Osborne | Fix docs for water/needle, match more recent versions... |
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| 2017-03-20 |
Brian Osborne | Add documentation to show how to make HTML |
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| 2017-02-27 |
Brian Osborne | More explanation in docs |
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| 2017-02-26 |
Brian Osborne | Update INSTALL |
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| 2017-02-25 |
Brian Osborne | Clarify that normal use means provide Sequence objects... |
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| 2016-12-19 |
Chris Fields | shut off emboss and wise tests for now |
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| 2016-12-19 |
Chris Fields | retry non-sudo containerized approach |
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| 2016-12-19 |
Chris Fields | test using sudo, but maybe try using a local install... |
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| 2016-12-19 |
Chris Fields | make exec |
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| 2016-12-19 |
Chris Fields | fix path, and turn off samtools |
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| 2016-12-19 |
Chris Fields | initial test install |
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| 2016-12-19 |
Chris Fields | add initial install script directory, with samtools... |
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| 2016-12-19 |
Chris Fields | run latest CPAN release of BioPerl |
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| 2016-12-19 |
Chris Fields | shut off some tests so we can focus on a few failing... |
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| 2016-12-19 |
Chris Fields | oops, forgot Changes but it is a minor release for... |
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| 2016-12-19 |
Chris Fields | add in code to add version to META filesrelease-1-7-1 |
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| 2016-12-17 |
Chris Fields | remove SOAP dependency, since relevant modules no longe... release-1-7-0 |
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| 2016-12-17 |
Chris Fields | bump VERSION |
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| 2016-12-17 |
Chris Fields | SOAP eutils API not supported since 2015, modules are... |
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| 2016-12-17 |
Chris Fields | these should not be executable out of the box |
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| 2016-12-17 |
Chris Fields | Clean up a bit |
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| 2016-12-17 |
Chris Fields | add possible switch for samtools debugging |
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| 2016-12-17 |
Chris Fields | deversion README, add Changes for updated release |
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| 2016-12-17 |
Chris Fields | Get rid of generated MYMETA file |
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| 2016-12-17 |
Chris Fields | remove generated index |
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| 2016-12-17 |
Chris Fields | bump versions |
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| 2016-12-17 |
Chris Fields | fix samtools to work with modern versions; we should... |
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| 2016-11-25 |
Brian Osborne | Fixes from 'qifei9' |
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| 2016-09-13 |
Chris Fields | fix for bug mentioned in https://github.com/bioperl... |
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| 2016-07-17 |
Chris Fields | turn off Bio::DB::Sam for now |
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| 2016-07-17 |
Chris Fields | try hacking in the samtools installation location |
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| 2016-07-17 |
Chris Fields | add a few more vetted dists |
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| 2016-07-17 |
Chris Fields | tweak travis, will have to play w/ apt to get dependenc... |
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| 2016-07-17 |
Chris Fields | remove bad character |
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| 2016-07-17 |
Chris Fields | try triggering travis |
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| 2016-07-17 |
Chris Fields | gotta install bioperl first! |
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| 2016-07-17 |
Chris Fields | add travis-ci file |
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| 2016-07-07 |
Chris Fields | Merge pull request #40 from hettling/fast-bootstrap |
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| 2016-07-07 |
Chris Fields | Merge pull request #39 from hettling/master |
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| 2016-07-07 |
hettling | Merge branch 'master' of https://github.com/hettling... 40/head |
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| 2016-07-07 |
hettling | adding support for RAxML's fast bootstrap functionality... |
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| 2016-07-07 |
hettling | using basename from File::Basename since test failed39/head |
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| 2015-05-28 |
Chris Fields | Merge pull request #15 from adsj/master |
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| 2015-05-26 |
Adam Sjøgren | Supply TEMPLATE and SUFFIX for temporary query sequence... 15/head |
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| 2015-02-20 |
David Pinto | Raxml: use File::Spec->devnull() instead of our own... |
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| 2015-02-20 |
Carnë Draug | Merge pull request #13 from hettling/master |
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| 2015-01-31 |
Chris Fields | convert to markdown for consistency |
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| 2015-01-31 |
Chris Fields | convert to markdown for consistency |
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| 2015-01-28 |
hettling | removed obsolete whitespace13/head |
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| 2014-12-18 |
Francisco J... | StandAloneBlastPlus: Improved 'db_info' Algorithm ID... |
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| 2014-12-18 |
Francisco J... | Added MYMETA.json to .gitignore |
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| 2014-10-29 |
hettling | Added -d option (random starting tree) to raxml run... |
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| 2014-10-29 |
hettling | (1) when -w option was provided with a custom directory... |
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| 2014-09-01 |
Francisco J... | WBCommandExts.t: Fixed a pending TODO related to |
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| 2014-08-26 |
Mark A. Jensen | Update Build.PL, MYMETA.json with build dependencies |
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| 2014-08-24 |
Mark A. Jensen | no dependencies on any of the Test::* or Sub::Uplevel... |
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| 2014-08-24 |
Mark A. Jensen | Update Build.PL with config_requires and build_requires... |
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| 2014-08-24 |
Mark A. Jensen | Merge branch 'master' into topic/move_WrapperBase |
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